Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k24r
(710 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-2545|AAF53426.1| 189|Drosophila melanogaster CG10846-P... 264 8e-71
AF224265-1|AAF34709.1| 189|Drosophila melanogaster dynactin sub... 263 1e-70
AE014134-2544|AAN10884.1| 205|Drosophila melanogaster CG10846-P... 218 5e-57
BT023827-1|AAZ86748.1| 185|Drosophila melanogaster RE42959p pro... 30 3.6
AE014134-3051|AAF53769.1| 185|Drosophila melanogaster CG17347-P... 30 3.6
AY069488-1|AAL39633.1| 459|Drosophila melanogaster LD21841p pro... 29 4.7
AE014297-1442|AAF54740.2| 459|Drosophila melanogaster CG3313-PA... 29 4.7
AY075367-1|AAL68214.1| 180|Drosophila melanogaster GM12126p pro... 29 6.2
AY071041-1|AAL48663.2| 492|Drosophila melanogaster RE13129p pro... 29 6.2
AE014298-2701|AAF48826.2| 486|Drosophila melanogaster CG6106-PA... 29 6.2
AE014297-3645|AAF56348.1| 180|Drosophila melanogaster CG7006-PA... 29 6.2
>AE014134-2545|AAF53426.1| 189|Drosophila melanogaster CG10846-PA,
isoform A protein.
Length = 189
Score = 264 bits (647), Expect = 8e-71
Identities = 124/187 (66%), Positives = 150/187 (80%), Gaps = 6/187 (3%)
Frame = -1
Query: 584 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 405
ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1 MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60
Query: 404 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 225
C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61 CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120
Query: 224 VLKDCCMIEDNSVLPAETIVPSFARYS------GSPAHLITTLPEAMPDLMTEFTKSYYQ 63
VLKDCC+IED +VLP ET V S+ RY+ G + +P AM D M +TKS+Y+
Sbjct: 121 VLKDCCVIEDGAVLPPETTVSSYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTKSFYE 179
Query: 62 HFLPTTA 42
HF+ A
Sbjct: 180 HFVRAPA 186
>AF224265-1|AAF34709.1| 189|Drosophila melanogaster dynactin
subunit p25 protein.
Length = 189
Score = 263 bits (645), Expect = 1e-70
Identities = 124/187 (66%), Positives = 149/187 (79%), Gaps = 6/187 (3%)
Frame = -1
Query: 584 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 405
ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1 MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60
Query: 404 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 225
C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61 CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120
Query: 224 VLKDCCMIEDNSVLPAETIVPSFARYS------GSPAHLITTLPEAMPDLMTEFTKSYYQ 63
VLKDCC IED +VLP ET V S+ RY+ G + +P AM D M +TKS+Y+
Sbjct: 121 VLKDCCAIEDGAVLPPETTVSSYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTKSFYE 179
Query: 62 HFLPTTA 42
HF+ A
Sbjct: 180 HFVRAPA 186
>AE014134-2544|AAN10884.1| 205|Drosophila melanogaster CG10846-PB,
isoform B protein.
Length = 205
Score = 218 bits (533), Expect = 5e-57
Identities = 112/191 (58%), Positives = 137/191 (71%), Gaps = 25/191 (13%)
Frame = -1
Query: 539 TASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKK 360
+ASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+C+I K SVIRPP+K+
Sbjct: 13 SASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRYCVIGKNSVIRPPYKQ 72
Query: 359 FSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVI------------------- 237
FSKG+AFFP+ +G+HVFVGE VV+AA +GSYVYIGKN +I
Sbjct: 73 FSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIVSYYLLLYPCNPFTFTIFQ 132
Query: 236 GRRCVLKDCCMIEDNSVLPAETIVPSFARYS------GSPAHLITTLPEAMPDLMTEFTK 75
GRRCVLKDCC+IED +VLP ET V S+ RY+ G + +P AM D M +TK
Sbjct: 133 GRRCVLKDCCVIEDGAVLPPETTVSSYMRYTARGTIEGGQGNPY-FVPAAMQDEMINYTK 191
Query: 74 SYYQHFLPTTA 42
S+Y+HF+ A
Sbjct: 192 SFYEHFVRAPA 202
>BT023827-1|AAZ86748.1| 185|Drosophila melanogaster RE42959p
protein.
Length = 185
Score = 29.9 bits (64), Expect = 3.6
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Frame = -1
Query: 488 NIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVF 309
+I +V A + D + G CII + + + + + L +G H
Sbjct: 24 DITFSSGCVVHPSATVIADAGPIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNV 83
Query: 308 VGENTVVNAAVVG------SYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 165
V AA +G S Y+G V + CV+ I + LP TIV
Sbjct: 84 FEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIV 137
>AE014134-3051|AAF53769.1| 185|Drosophila melanogaster CG17347-PA
protein.
Length = 185
Score = 29.9 bits (64), Expect = 3.6
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Frame = -1
Query: 488 NIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVF 309
+I +V A + D + G CII + + + + + L +G H
Sbjct: 24 DITFSSGCVVHPSATVIADAGPIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNV 83
Query: 308 VGENTVVNAAVVG------SYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 165
V AA +G S Y+G V + CV+ I + LP TIV
Sbjct: 84 FEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIV 137
>AY069488-1|AAL39633.1| 459|Drosophila melanogaster LD21841p
protein.
Length = 459
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 144 RKPSTPDHYITRSNARSDDRVYKELLSALLTNYSL 40
RKP PD ++T ++ SD+ ++ L T+Y+L
Sbjct: 42 RKPDKPDDFVTYEDSGSDEETPQQQEEVLNTSYNL 76
>AE014297-1442|AAF54740.2| 459|Drosophila melanogaster CG3313-PA
protein.
Length = 459
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 144 RKPSTPDHYITRSNARSDDRVYKELLSALLTNYSL 40
RKP PD ++T ++ SD+ ++ L T+Y+L
Sbjct: 42 RKPDKPDDFVTYEDSGSDEETPQQQEEVLNTSYNL 76
>AY075367-1|AAL68214.1| 180|Drosophila melanogaster GM12126p
protein.
Length = 180
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 373 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 513
GRITE Q + V ++ PL L T CKT +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163
>AY071041-1|AAL48663.2| 492|Drosophila melanogaster RE13129p
protein.
Length = 492
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 497 GSQNIVLHGKVIVQSDAIIR 438
GSQN ++HG +IV ++ IIR
Sbjct: 21 GSQNALIHGGIIVDTEGIIR 40
>AE014298-2701|AAF48826.2| 486|Drosophila melanogaster CG6106-PA
protein.
Length = 486
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 497 GSQNIVLHGKVIVQSDAIIR 438
GSQN ++HG +IV ++ IIR
Sbjct: 15 GSQNALIHGGIIVDTEGIIR 34
>AE014297-3645|AAF56348.1| 180|Drosophila melanogaster CG7006-PA
protein.
Length = 180
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +1
Query: 373 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 513
GRITE Q + V ++ PL L T CKT +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,864,614
Number of Sequences: 53049
Number of extensions: 600120
Number of successful extensions: 1395
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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