Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k24r
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-8|AAF36009.2| 184|Caenorhabditis elegans Hypothetical ... 155 2e-38
CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical... 37 0.012
AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical ... 31 0.81
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 28 7.6
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 7.6
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 7.6
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 7.6
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 7.6
>AC024200-8|AAF36009.2| 184|Caenorhabditis elegans Hypothetical
protein Y71F9AL.14 protein.
Length = 184
Score = 155 bits (377), Expect = 2e-38
Identities = 67/178 (37%), Positives = 114/178 (64%)
Frame = -1
Query: 584 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 405
M+L YY+++E+ +T +GNKV+++ + G+QNI++ GK I++ IRGDLA VK G++
Sbjct: 1 MDLPIVYYDETEWAKTHTGNKVNKKHAIAGTQNILIAGKTIIEEGVTIRGDLATVKIGKY 60
Query: 404 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 225
C++ IRP K FSK + +GD+VF+ E VVNAA + ++V++G V+G C
Sbjct: 61 CVLKSRCNIRPCMKIFSKKPTMCNVMIGDYVFIEEECVVNAAQIYAFVHLGARAVLGNGC 120
Query: 224 VLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLP 51
V+++C + ++V+PA+ + P ++ G+PA ++ T P +LM E YY +F+P
Sbjct: 121 VIRECSRVLPDTVVPADALFPPYSTIGGNPAQVVGTEPRCTENLMMEAITMYYDNFVP 178
>CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical
protein C42C1.5 protein.
Length = 365
Score = 37.1 bits (82), Expect = 0.012
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = -1
Query: 461 VQSDAIIRGDLA---NVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTV 291
+ A IRG++ + G C+I VI P K GV + +G +
Sbjct: 249 IHPTATIRGNVMVDPSATVGENCVIGPDVVIGPRVK-IEGGVRILHSTILSDSSIGNYSW 307
Query: 290 VNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 162
V+ ++VG +IG V I CV+ D +++D L +++P
Sbjct: 308 VSGSIVGRKCHIGSWVRIENICVIGDDVVVKDELYLNGASVLP 350
>AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical
protein Y54E10A.5 protein.
Length = 180
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Frame = -1
Query: 323 GDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDN-------SVLPAETIV 165
G + +G+ + S Y+G VIG VL+D C + D+ +V + +
Sbjct: 66 GQPMIIGDWNIFQVHSKSSAKYVGSRNVIGVHAVLEDGCSVSDDCSVGAKCTVFSHQNLE 125
Query: 164 PSFARYSGSPAHLITTLPEAMPDLMTEFTK 75
PS + Y+ + T P EF +
Sbjct: 126 PSVSVYAATNLSRTTKTPNMTSPHQIEFLR 155
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = -1
Query: 326 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARY 147
+G H + T + ++++G IG+N VI + D +I + + +P E+I+ + Y
Sbjct: 348 IGAHTEISSKTRITSSMIGKNCKIGENCVI-EYAFIGDDVVIPNGAHIPKESIIGNGVMY 406
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 142 PEYLAKEGTIVSAGRTELSSIMQQSLSTHLLPITTFFPM*TYEPTTAAFTTVFSPTKT*S 321
P A++ I T+ S+ +QQS +P+T + PT+A V SPT
Sbjct: 760 PHSSAQQQPIPPPLSTQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAV 819
Query: 322 PI 327
P+
Sbjct: 820 PV 821
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 142 PEYLAKEGTIVSAGRTELSSIMQQSLSTHLLPITTFFPM*TYEPTTAAFTTVFSPTKT*S 321
P A++ I T+ S+ +QQS +P+T + PT+A V SPT
Sbjct: 760 PHSSAQQQPIPPPLSTQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAV 819
Query: 322 PI 327
P+
Sbjct: 820 PV 821
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/80 (20%), Positives = 33/80 (41%)
Frame = -1
Query: 572 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 393
D + + +Y + S K+ R LC + + + + ++ GD + V R+C +
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484
Query: 392 KGSVIRPPFKKFSKGVAFFP 333
+G F+K + P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/80 (20%), Positives = 33/80 (41%)
Frame = -1
Query: 572 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 393
D + + +Y + S K+ R LC + + + + ++ GD + V R+C +
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484
Query: 392 KGSVIRPPFKKFSKGVAFFP 333
+G F+K + P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 129 PDHYITRSNARSDDRVYKELLSAL 58
PDH+ + S DR+ K+LLS L
Sbjct: 1067 PDHFCSELQLESGDRILKKLLSGL 1090
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 129 PDHYITRSNARSDDRVYKELLSAL 58
PDH+ + S DR+ K+LLS L
Sbjct: 1067 PDHFCSELQLESGDRILKKLLSGL 1090
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 129 PDHYITRSNARSDDRVYKELLSAL 58
PDH+ + S DR+ K+LLS L
Sbjct: 1067 PDHFCSELQLESGDRILKKLLSGL 1090
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 129 PDHYITRSNARSDDRVYKELLSAL 58
PDH+ + S DR+ K+LLS L
Sbjct: 1067 PDHFCSELQLESGDRILKKLLSGL 1090
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 FFKRRSYHGAFA-DYTKSTCFNISQISSYDGITLYDHFTV*NNILRATE 503
FF +Y FA + ++ C NI IS+ D + +HF + IL++ E
Sbjct: 401 FFTNLTYSSNFAHEAWRTICLNICSISNIDPKEVLEHFKL-GGILKSLE 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,107
Number of Sequences: 27780
Number of extensions: 324720
Number of successful extensions: 869
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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