Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24r
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.2  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.8  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 479 KQYSESHRALFVGLLYYRRQFLHIPIYC 562
           K Y  ++R L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 643 IIEGS*NIKNN*DHNFIF*KWNSKTLITINRN 548
           I  G  N KNN   +    +WN KT +TI RN
Sbjct: 55  IQSGEYNYKNNVPIDVD--RWNGKTFVTILRN 84


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 479 KQYSESHRALFVGLLYYRRQFLHIPIYC 562
           K Y  +++ L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 479 KQYSESHRALFVGLLYYRRQFLHIPIYC 562
           K Y  +++ L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +2

Query: 470 YRVKQYSESHRALFVGLLYYRRQFLHIPIYC 562
           Y    Y+ +++ L+  ++   +  + +PIYC
Sbjct: 322 YNYNNYNNNYKPLYYNIINIEQIPVPVPIYC 352


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 586 KWNSKTLITINRN 548
           +W  KT +TI RN
Sbjct: 77  RWRDKTFVTIERN 89


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 340 NATPLLNFLKGGRITEPLLIIQ 405
           N+TPLL  L GG  T   L+I+
Sbjct: 119 NSTPLLKKLYGGNSTIIFLLIR 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,015
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)