Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24r
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47260.1 68414.m05232 bacterial transferase hexapeptide repea...    48   5e-06
At3g48680.1 68416.m05316 bacterial transferase hexapeptide repea...    44   1e-04
At1g19580.1 68414.m02439 bacterial transferase hexapeptide repea...    43   2e-04
At5g66510.1 68418.m08386 bacterial transferase hexapeptide repea...    43   2e-04
At5g63510.1 68418.m07972 bacterial transferase hexapeptide repea...    42   4e-04
At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative...    30   1.3  
At5g47480.1 68418.m05863 expressed protein                             30   1.7  
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea...    29   4.0  
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    28   7.0  
At2g17640.1 68415.m02040 serine O-acetyltransferase, putative (S...    28   7.0  
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi...    27   9.3  

>At1g47260.1 68414.m05232 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 278

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 29/126 (23%), Positives = 58/126 (46%)
 Frame = -1

Query: 446 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 267
           ++RGD+ N+  G    I   +++       S  V   P  +GD+V VG + V++   V  
Sbjct: 84  VLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKV--LPTLIGDNVTVGHSAVIHGCTVED 141

Query: 266 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMT 87
             ++G    +    V++   M+   S++   T +PS   + G+PA  +  L +     ++
Sbjct: 142 DAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEVWGGNPAKFMRKLTDEEIVYIS 201

Query: 86  EFTKSY 69
           +  K+Y
Sbjct: 202 QSAKNY 207


>At3g48680.1 68416.m05316 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats);
           ferripyochelin binding protein - Methanobacterium
           thermoautotrophicum, EMBL:AE000918.1
          Length = 256

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
 Frame = -1

Query: 488 NIVLHGKVIVQ------SDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQ 327
           N+VL G+V V       + A++RGDL  +  G    + +  V+   +     G+    L 
Sbjct: 81  NVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSS-PTGLPAQTL- 138

Query: 326 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARY 147
           +  +V VG  +++ +  +     IG++ ++    +++   ++E  SVLP    +PS   +
Sbjct: 139 IDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELW 198

Query: 146 SGSPAHLITTLPE----AMPDL---MTEFTKSYYQHFLP 51
            G+PA  I TL       +P L   +   +  Y+  FLP
Sbjct: 199 GGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLP 237


>At1g19580.1 68414.m02439 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 275

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 56/126 (44%)
 Frame = -1

Query: 446 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 267
           ++RGD+  V  G    I   S++       S  V   P  +GD+V +G + V++   V  
Sbjct: 84  VLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKV--HPTIIGDNVTIGHSAVLHGCTVED 141

Query: 266 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMT 87
             +IG    +    V++   M+   +++   T +PS   + G+PA  +  L +     ++
Sbjct: 142 ETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEVWGGNPARFLRKLTDEEIAFIS 201

Query: 86  EFTKSY 69
           +   +Y
Sbjct: 202 QSATNY 207


>At5g66510.1 68418.m08386 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 258

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/113 (22%), Positives = 51/113 (45%)
 Frame = -1

Query: 446 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 267
           ++RGD  ++  G    I   +++       S  V   P  +GD+V +G + V++   V  
Sbjct: 84  VLRGDANSISVGAGTNIQDNALVHVAKTNLSGKV--LPTVIGDNVTIGHSAVLHGCTVED 141

Query: 266 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPE 108
             YIG +  +     ++   M+   +++   T +PS   + G+PA  +  + E
Sbjct: 142 EAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIPSGEVWGGNPAKFLRKVTE 194


>At5g63510.1 68418.m07972 bacterial transferase hexapeptide
           repeat-containing protein contains similarity to
           acetyltransferase; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 252

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
 Frame = -1

Query: 488 NIVLHGKVIVQ------SDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQ 327
           N+VL G+V V       + A++RGDL  +  G    + +  V+   +     G+    + 
Sbjct: 77  NVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSS-PTGLPAATI- 134

Query: 326 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARY 147
           +  +V VG  +++ +  +     IG++ ++    +++   ++E  SV+P    +PS   +
Sbjct: 135 IDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELW 194

Query: 146 SGSPAHLITTLPE----AMPDL---MTEFTKSYYQHFLP 51
            G+PA  I TL       +P L   +   +  Y+  FLP
Sbjct: 195 GGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLP 233


>At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative
           similar to GDP-mannose pyrophosphorylase [Arabidopsis
           thaliana] GI:3598958; contains Pfam profile PF00483:
           Nucleotidyl transferase
          Length = 331

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -1

Query: 332 LQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVL 219
           L  GD++ +G   V  +AV+G    IG +VVIG  CV+
Sbjct: 226 LATGDNI-IGNVLVHESAVIGEGCLIGPDVVIGPGCVI 262


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 76  FVN-SVIRSGIASGNVVIRCAGLPEYLAKEGTIVSAGRTELSS 201
           F N SV+   +  G+V +  AGL   +A EGT  S G+ E SS
Sbjct: 51  FANLSVVDDVLGDGDVALNEAGLGNDVANEGTSGSVGKEEPSS 93


>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
           repeat-containing protein similar to SP|P32203
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) {Yersinia
           enterocolitica}; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 299

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 326 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIED 195
           +G  V +G NTV     +GS V IG +  IG  C + D C+I +
Sbjct: 114 LGAEVHIGSNTV-----IGSSVKIGPSTKIG-NCSIGDLCVIHN 151


>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 533 RQFLHIPIYCNKCLGVPFSKYKIMVSIIFYILRTFDDSQ 649
           R+   + I C   +G+P S +KI+  ++F++L      Q
Sbjct: 391 REIQPLLISCLAEIGIPESTFKILCQVVFHVLHELSSYQ 429


>At2g17640.1 68415.m02040 serine O-acetyltransferase, putative
           (SAT-106) similar to Arabidopsis thaliana serine
           acetyltransferase GI:905391
          Length = 323

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 167 VPSFARYSGSPAHLITTLPEAMPDLMT--EFTKSYYQH 60
           VPS +  +G+PA LI  + E  P L    + TK +++H
Sbjct: 257 VPSHSVVAGNPAKLIRVMEEQDPSLAMKHDATKEFFRH 294


>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 273 YNSCIHNSVLPNKNMITHLQGKKCD 347
           Y+  IHNSVLP+  +IT +  K CD
Sbjct: 161 YHRMIHNSVLPDNYVITSVL-KACD 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,053,850
Number of Sequences: 28952
Number of extensions: 287636
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)