Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    28   0.056
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    26   0.30 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.2  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.9  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.4  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 230 VISVLEFHF-QNIKLWSQLFFIF*EPSMIHRLK 135
           ++  +++HF   +KLWSQLF  F    ++H +K
Sbjct: 83  IVRFMKYHFFGTLKLWSQLFSTFAGIEVLHVVK 115


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 436 LNFLKGGRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTV 281
           LNF       + L +   L + +L ++ + + ++C + L C +   E Q TV
Sbjct: 255 LNFFTSTLEIDNLYLKHKLEISSLVQTAITLVAMCGLVLICDSAKSESQQTV 306


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 564 CVLKDCCMIEDNSVLPAE 617
           CVL DC   ED + +P +
Sbjct: 168 CVLPDCFCSEDGTTIPGD 185


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 383 STCFNISQISSYDGITLYDHF--TV*NNILRATEHCLSAYFITGGSFYIFR 237
           + C  I  I S  G+  Y  F   V + + +ATEH +     + G F +FR
Sbjct: 186 AACGRIHPIGS-GGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFR 235


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 383 STCFNISQISSYDGITLYDHF--TV*NNILRATEHCLSAYFITGGSFYIFR 237
           + C  I  I S  G+  Y  F   V + + +ATEH +     + G F +FR
Sbjct: 500 AACGRIHPIGS-GGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFR 549


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 383 STCFNISQISSYDGITLYDHF--TV*NNILRATEHCLSAYFITGGSFYIFR 237
           + C  I  I S  G+  Y  F   V + + +ATEH +     + G F +FR
Sbjct: 733 AACGRIHPIGS-GGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFR 782


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 383 STCFNISQISSYDGITLYDHF--TV*NNILRATEHCLSAYFITGGSFYIFR 237
           + C  I  I S  G+  Y  F   V + + +ATEH +     + G F +FR
Sbjct: 733 AACGRIHPIGS-GGMVWYQMFEYAVGHWMQKATEHVIGCVLCSPGCFSLFR 782


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 520 PTTAAFTTVFSPTKT*SPICKGKNATPL--LNFLKGGR 413
           PTT++ + + SP       C G N + +  LN L  GR
Sbjct: 220 PTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 257


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 520 PTTAAFTTVFSPTKT*SPICKGKNATPL--LNFLKGGR 413
           PTT++ + + SP       C G N + +  LN L  GR
Sbjct: 9   PTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 46


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 520 PTTAAFTTVFSPTKT*SPICKGKNATPL--LNFLKGGR 413
           PTT++ + + SP       C G N + +  LN L  GR
Sbjct: 9   PTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGR 46


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 299 RATEHCLSAYFITGGSFYIFR 237
           +ATEH +     + G F +FR
Sbjct: 789 KATEHVIGCVLCSPGCFSLFR 809


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 299 RATEHCLSAYFITGGSFYIFR 237
           +ATEH +     + G F +FR
Sbjct: 789 KATEHVIGCVLCSPGCFSLFR 809


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 299 RATEHCLSAYFITGGSFYIFR 237
           +ATEH +     + G F +FR
Sbjct: 789 KATEHVIGCVLCSPGCFSLFR 809


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 299 RATEHCLSAYFITGGSFYIFR 237
           +ATEH +     + G F +FR
Sbjct: 789 KATEHVIGCVLCSPGCFSLFR 809


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 43  FKLSAYIGTLYINT 2
           F  S Y+GT++INT
Sbjct: 82  FCASIYVGTVWINT 95


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 237 IYCNKCLGVPFSKYKIMVS 181
           +YC KC  VP  K + +V+
Sbjct: 60  LYCMKCECVPLQKKRRIVA 78


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 520 PTTAAFTTVFSPTKT*SPICKGKNATPLLN 431
           PTT++ + + SP       C G N + +L+
Sbjct: 220 PTTSSSSALESPDPASRSSCLGSNTSSMLS 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,082
Number of Sequences: 336
Number of extensions: 2973
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)