Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9309| Best HMM Match : Hexapep (HMM E-Value=2.6e-08)               169   1e-42
SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)            31   0.77 
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   1.3  
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 30   1.8  
SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  28   5.4  
SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                 28   5.4  

>SB_9309| Best HMM Match : Hexapep (HMM E-Value=2.6e-08)
          Length = 235

 Score =  169 bits (412), Expect = 1e-42
 Identities = 87/141 (61%), Positives = 101/141 (71%)
 Frame = +3

Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
           ME  DT+YNK+EY+ET                        I+QSD IIRGDLANV+ GR 
Sbjct: 1   MEATDTHYNKAEYIETT-----------------------IIQSDCIIRGDLANVRIGRQ 37

Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
           C+ISK SVIRPPFKKFSKGVAFFPL +GDHV + E+ VVNAA +GS+V+IGKN VIGRR 
Sbjct: 38  CVISKRSVIRPPFKKFSKGVAFFPLHIGDHVMIEEDCVVNAAQIGSFVHIGKNCVIGRRS 97

Query: 567 VLKDCCMIEDNSVLPAETIVP 629
           VLKDCC I DN+VLP ET+VP
Sbjct: 98  VLKDCCAIADNTVLPPETVVP 118


>SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)
          Length = 379

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 267 KVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFS 437
           K    T+ CG     L GK+I+Q     R D++ ++  + CIIS+ S +   FK +S
Sbjct: 213 KQGETTIDCGRCRKSL-GKLIIQQQYPGRADVSGIQLNKHCIISRNSDV---FKNYS 265


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 399  KGSVIRPPFKK-FSKGVAFFPLQMGDHVFVGENTVVNAAVVGSY 527
            K + I+  +K+ +S+G   F +Q G H F G N  V  A  G Y
Sbjct: 2400 KKNPIQECYKRAYSRGYRMFSVQAGGHCFSGRNAHVTYAKYGPY 2443


>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 287 HCLSAYFITGGSFYIFRFIVISVLEFHFQNIKLWSQLFFI 168
           HCLS YFI   +F ++  +V++VL F  + I  +   FF+
Sbjct: 4   HCLSKYFIFTLNFIVWYMVVLAVL-FTLEIIAGFLSFFFV 42


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = +3

Query: 477 VFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
           +F+G  ++   + +G+   +  N VI   C+++   ++ DN+++ A + V
Sbjct: 801 LFLGRISIGENSSIGTRSTVTLNTVINENCIVEPLTLVPDNTIIDANSQV 850


>SB_47084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 459 LQMGDHVFVGEN-TVVNAAVVGSYVYIGKNVVIGRRC 566
           L + +H+    N TV  AAV+G+ +++ +  ++GRRC
Sbjct: 24  LNLLNHLCTARNVTVAVAAVLGTSIWLFRRYLVGRRC 60


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 521 AYNSCIHNSVLPNKNMITHLQGKK 450
           AYNS   N   P  N I HLQG++
Sbjct: 655 AYNSRTPNMTAPQSNQILHLQGQQ 678


>SB_8799| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 334

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -2

Query: 443 SFAEFFKRRSYHGAFADYTKSTCFNISQISSYDGITLYDHFTV*NNILRATEHCLSAYF 267
           SF  F      +G+F +Y  +T    S       + ++D FT     +RA   C S  F
Sbjct: 18  SFISFACSEQKYGSFLNYFSTTHGKRSLSKLLKSVKVFDEFTCIRECIRAEGSCTSVNF 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,777,720
Number of Sequences: 59808
Number of extensions: 357082
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)