Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.    233   4e-61
AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens ...   233   4e-61
D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.                   37   0.051
CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.                37   0.051
BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.           37   0.051

>BC004191-1|AAH04191.1|  182|Homo sapiens dynactin 5 (p25) protein.
          Length = 182

 Score =  233 bits (570), Expect = 4e-61
 Identities = 106/141 (75%), Positives = 122/141 (86%)
 Frame = +3

Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
           MEL +  YNKSEY+ETASGNKVSRQ+VLCGSQNIVL+GK IV +D IIRGDLANV+ GR 
Sbjct: 1   MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH 60

Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
           C++   SVIRPPFKKFSKGVAFFPL +GDHVF+ E+ VVNAA +GSYV++GKN VIGRRC
Sbjct: 61  CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC 120

Query: 567 VLKDCCMIEDNSVLPAETIVP 629
           VLKDCC I DN+VLP ET+VP
Sbjct: 121 VLKDCCKILDNTVLPPETVVP 141


>AK027387-1|BAB55077.1|  182|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14481 fis, clone MAMMA1002351, highly similar to
           Mus musculus dynactin subunit p25 (p25) mRNA. ).
          Length = 182

 Score =  233 bits (570), Expect = 4e-61
 Identities = 106/141 (75%), Positives = 122/141 (86%)
 Frame = +3

Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
           MEL +  YNKSEY+ETASGNKVSRQ+VLCGSQNIVL+GK IV +D IIRGDLANV+ GR 
Sbjct: 1   MELGELLYNKSEYIETASGNKVSRQSVLCGSQNIVLNGKTIVMNDCIIRGDLANVRVGRH 60

Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
           C++   SVIRPPFKKFSKGVAFFPL +GDHVF+ E+ VVNAA +GSYV++GKN VIGRRC
Sbjct: 61  CVVKSRSVIRPPFKKFSKGVAFFPLHIGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRRC 120

Query: 567 VLKDCCMIEDNSVLPAETIVP 629
           VLKDCC I DN+VLP ET+VP
Sbjct: 121 VLKDCCKILDNTVLPPETVVP 141


>D84145-1|BAA19984.1|  190|Homo sapiens WS-3 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.051
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 513 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


>CR456851-1|CAG33132.1|  190|Homo sapiens DCTN6 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.051
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 513 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


>BC013175-1|AAH13175.1|  190|Homo sapiens dynactin 6 protein.
          Length = 190

 Score = 37.1 bits (82), Expect = 0.051
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 513 VVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
           V+ S  Y+G+NV++   C++  CC +    V+P  T++
Sbjct: 106 VIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVI 143


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,362,831
Number of Sequences: 237096
Number of extensions: 1640167
Number of successful extensions: 2471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)