Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-P...   243   2e-64
AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin sub...   242   3e-64
AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-P...   197   1e-50
BT023827-1|AAZ86748.1|  185|Drosophila melanogaster RE42959p pro...    30   3.0  
AE014134-3051|AAF53769.1|  185|Drosophila melanogaster CG17347-P...    30   3.0  
AY075367-1|AAL68214.1|  180|Drosophila melanogaster GM12126p pro...    29   5.2  
AY071041-1|AAL48663.2|  492|Drosophila melanogaster RE13129p pro...    29   5.2  
AE014298-2701|AAF48826.2|  486|Drosophila melanogaster CG6106-PA...    29   5.2  
AE014297-3645|AAF56348.1|  180|Drosophila melanogaster CG7006-PA...    29   5.2  

>AE014134-2545|AAF53426.1|  189|Drosophila melanogaster CG10846-PA,
           isoform A protein.
          Length = 189

 Score =  243 bits (594), Expect = 2e-64
 Identities = 108/140 (77%), Positives = 126/140 (90%)
 Frame = +3

Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
           ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1   MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60

Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
           C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61  CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120

Query: 567 VLKDCCMIEDNSVLPAETIV 626
           VLKDCC+IED +VLP ET V
Sbjct: 121 VLKDCCVIEDGAVLPPETTV 140


>AF224265-1|AAF34709.1|  189|Drosophila melanogaster dynactin
           subunit p25 protein.
          Length = 189

 Score =  242 bits (592), Expect = 3e-64
 Identities = 108/140 (77%), Positives = 125/140 (89%)
 Frame = +3

Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
           ME+ DTYY+K EYVETASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+
Sbjct: 1   MEIPDTYYSKDEYVETASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRY 60

Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
           C+I K SVIRPP+K+FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +IGRRC
Sbjct: 61  CVIGKNSVIRPPYKQFSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIGRRC 120

Query: 567 VLKDCCMIEDNSVLPAETIV 626
           VLKDCC IED +VLP ET V
Sbjct: 121 VLKDCCAIEDGAVLPPETTV 140


>AE014134-2544|AAN10884.1|  205|Drosophila melanogaster CG10846-PB,
           isoform B protein.
          Length = 205

 Score =  197 bits (480), Expect = 1e-50
 Identities = 96/144 (66%), Positives = 113/144 (78%), Gaps = 19/144 (13%)
 Frame = +3

Query: 252 TASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKK 431
           +ASGNKVSR TVLCGSQNI+L+GKVIVQS AIIRGDLANV+TGR+C+I K SVIRPP+K+
Sbjct: 13  SASGNKVSRHTVLCGSQNIILNGKVIVQSGAIIRGDLANVRTGRYCVIGKNSVIRPPYKQ 72

Query: 432 FSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVI------------------- 554
           FSKG+AFFP+ +G+HVFVGE  VV+AA +GSYVYIGKN +I                   
Sbjct: 73  FSKGIAFFPMHVGEHVFVGEGAVVSAATIGSYVYIGKNAIIVSYYLLLYPCNPFTFTIFQ 132

Query: 555 GRRCVLKDCCMIEDNSVLPAETIV 626
           GRRCVLKDCC+IED +VLP ET V
Sbjct: 133 GRRCVLKDCCVIEDGAVLPPETTV 156


>BT023827-1|AAZ86748.1|  185|Drosophila melanogaster RE42959p
           protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
 Frame = +3

Query: 303 NIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVF 482
           +I      +V   A +  D   +  G  CII + + +    +  +       L +G H  
Sbjct: 24  DITFSSGCVVHPSATVIADAGPIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNV 83

Query: 483 VGENTVVNAAVVG------SYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
                 V AA +G      S  Y+G  V +   CV+     I  +  LP  TIV
Sbjct: 84  FEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIV 137


>AE014134-3051|AAF53769.1|  185|Drosophila melanogaster CG17347-PA
           protein.
          Length = 185

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
 Frame = +3

Query: 303 NIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVF 482
           +I      +V   A +  D   +  G  CII + + +    +  +       L +G H  
Sbjct: 24  DITFSSGCVVHPSATVIADAGPIIIGENCIIEEYATVAHRLEPGAVWDVNNILSIGTHNV 83

Query: 483 VGENTVVNAAVVG------SYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
                 V AA +G      S  Y+G  V +   CV+     I  +  LP  TIV
Sbjct: 84  FEVGCQVEAAKIGDKNVFESKCYVGPGVTVSSGCVVGAGIKIHGSQRLPENTIV 137


>AY075367-1|AAL68214.1|  180|Drosophila melanogaster GM12126p
           protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 418 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 278
           GRITE     Q + V ++   PL    L   T  CKT   +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163


>AY071041-1|AAL48663.2|  492|Drosophila melanogaster RE13129p
           protein.
          Length = 492

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 294 GSQNIVLHGKVIVQSDAIIR 353
           GSQN ++HG +IV ++ IIR
Sbjct: 21  GSQNALIHGGIIVDTEGIIR 40


>AE014298-2701|AAF48826.2|  486|Drosophila melanogaster CG6106-PA
           protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 294 GSQNIVLHGKVIVQSDAIIR 353
           GSQN ++HG +IV ++ IIR
Sbjct: 15  GSQNALIHGGIIVDTEGIIR 34


>AE014297-3645|AAF56348.1|  180|Drosophila melanogaster CG7006-PA
           protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 418 GRITEPLLIIQNLPVLTLAKSPLMMASLCTITLPCKTIF*EPQSTVC 278
           GRITE     Q + V ++   PL    L   T  CKT   +P +TVC
Sbjct: 119 GRITENAGQYQGVVVYSMNDLPLGFGVLARSTTDCKTA--DPMTTVC 163


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,459,548
Number of Sequences: 53049
Number of extensions: 498954
Number of successful extensions: 972
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)