Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k24f
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-8|AAF36009.2| 184|Caenorhabditis elegans Hypothetical ... 129 2e-30
CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical... 37 0.010
AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical ... 30 1.2
Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical p... 28 6.3
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 28 6.3
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 27 8.4
AC025715-11|AAP13753.1| 516|Caenorhabditis elegans Hypothetical... 27 8.4
AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical... 27 8.4
>AC024200-8|AAF36009.2| 184|Caenorhabditis elegans Hypothetical
protein Y71F9AL.14 protein.
Length = 184
Score = 129 bits (311), Expect = 2e-30
Identities = 55/141 (39%), Positives = 94/141 (66%)
Frame = +3
Query: 207 MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRF 386
M+L YY+++E+ +T +GNKV+++ + G+QNI++ GK I++ IRGDLA VK G++
Sbjct: 1 MDLPIVYYDETEWAKTHTGNKVNKKHAIAGTQNILIAGKTIIEEGVTIRGDLATVKIGKY 60
Query: 387 CIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRC 566
C++ IRP K FSK + +GD+VF+ E VVNAA + ++V++G V+G C
Sbjct: 61 CVLKSRCNIRPCMKIFSKKPTMCNVMIGDYVFIEEECVVNAAQIYAFVHLGARAVLGNGC 120
Query: 567 VLKDCCMIEDNSVLPAETIVP 629
V+++C + ++V+PA+ + P
Sbjct: 121 VIRECSRVLPDTVVPADALFP 141
>CU457741-18|CAM36360.1| 365|Caenorhabditis elegans Hypothetical
protein C42C1.5 protein.
Length = 365
Score = 37.1 bits (82), Expect = 0.010
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +3
Query: 330 VQSDAIIRGDLA---NVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTV 500
+ A IRG++ + G C+I VI P K GV + +G +
Sbjct: 249 IHPTATIRGNVMVDPSATVGENCVIGPDVVIGPRVK-IEGGVRILHSTILSDSSIGNYSW 307
Query: 501 VNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
V+ ++VG +IG V I CV+ D +++D L +++P
Sbjct: 308 VSGSIVGRKCHIGSWVRIENICVIGDDVVVKDELYLNGASVLP 350
>AC024810-6|AAF60762.2| 180|Caenorhabditis elegans Hypothetical
protein Y54E10A.5 protein.
Length = 180
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 468 GDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
G + +G+ + S Y+G VIG VL+D C + D+ + A+ V
Sbjct: 66 GQPMIIGDWNIFQVHSKSSAKYVGSRNVIGVHAVLEDGCSVSDDCSVGAKCTV 118
>Z54284-3|CAA91063.1| 666|Caenorhabditis elegans Hypothetical
protein D2085.3 protein.
Length = 666
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 465 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIV 626
+G H + T + ++++G IG+N VI + D +I + + +P E+I+
Sbjct: 348 IGAHTEISSKTRITSSMIGKNCKIGENCVI-EYAFIGDDVVIPNGAHIPKESII 400
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 483 VGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
+G +T +++ + IGKN IG CV+ + I D+ V+P +P
Sbjct: 348 IGAHTEISSKTRITSSMIGKNCKIGENCVI-EYAFIGDDVVIPNGAHIP 395
>Z93378-6|CAB07586.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/80 (20%), Positives = 33/80 (41%)
Frame = +3
Query: 219 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 398
D + + +Y + S K+ R LC + + + + ++ GD + V R+C +
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484
Query: 399 KGSVIRPPFKKFSKGVAFFP 458
+G F+K + P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504
>Z81457-11|CAB03818.1| 1049|Caenorhabditis elegans Hypothetical
protein C01G12.8 protein.
Length = 1049
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/80 (20%), Positives = 33/80 (41%)
Frame = +3
Query: 219 DTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIIS 398
D + + +Y + S K+ R LC + + + + ++ GD + V R+C +
Sbjct: 425 DHFKGEKKYEKEDSYQKLLRCATLCSRSHFRVPEFDVPLAKRVVNGDASEVAIMRYCEMI 484
Query: 399 KGSVIRPPFKKFSKGVAFFP 458
+G F+K + P
Sbjct: 485 RGDGQVDEFRKIMPKIGEIP 504
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 431 FFKRRSYHGAFA-DYTKSTCFNISQISSYDGITLYDHFTV*NNILRATE 288
FF +Y FA + ++ C NI IS+ D + +HF + IL++ E
Sbjct: 401 FFTNLTYSSNFAHEAWRTICLNICSISNIDPKEVLEHFKL-GGILKSLE 448
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 604 TELSSIMQQSLSTHLLPITTFFPM*TYEPTTAAFTTVFSPTKT*SPI 464
T+ S+ +QQS +P+T + PT+A V SPT P+
Sbjct: 775 TQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAVPV 821
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 604 TELSSIMQQSLSTHLLPITTFFPM*TYEPTTAAFTTVFSPTKT*SPI 464
T+ S+ +QQS +P+T + PT+A V SPT P+
Sbjct: 775 TQTSAEIQQSAQQPSVPVTMIANIPAMSPTSAQPQPVLSPTSAAVPV 821
>AC025715-11|AAP13753.1| 516|Caenorhabditis elegans Hypothetical
protein Y38F2AR.12b protein.
Length = 516
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 360 LANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVG 488
LAN T C + +VI P F K K FF G H +G
Sbjct: 76 LANHPTAGGCHLPDFTVITPVFFKGHKTPVFFVANRGHHADIG 118
>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
protein Y38F2AR.12a protein.
Length = 1187
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 360 LANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVG 488
LAN T C + +VI P F K K FF G H +G
Sbjct: 747 LANHPTAGGCHLPDFTVITPVFFKGHKTPVFFVANRGHHADIG 789
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,613
Number of Sequences: 27780
Number of extensions: 277848
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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