Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.80 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   1.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   1.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   3.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.9  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 312 KQYSESHRALFVGLLYYRRQFLHIPIYC 229
           K Y  ++R L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 148 IIEGS*NIKNN*DHNFIF*KWNSKTLITINRN 243
           I  G  N KNN   +    +WN KT +TI RN
Sbjct: 55  IQSGEYNYKNNVPIDVD--RWNGKTFVTILRN 84


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 312 KQYSESHRALFVGLLYYRRQFLHIPIYC 229
           K Y  +++ L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 312 KQYSESHRALFVGLLYYRRQFLHIPIYC 229
           K Y  +++ L+  + Y  +  + +PIYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = -1

Query: 321 YRVKQYSESHRALFVGLLYYRRQFLHIPIYC 229
           Y    Y+ +++ L+  ++   +  + +PIYC
Sbjct: 322 YNYNNYNNNYKPLYYNIINIEQIPVPVPIYC 352


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 205 KWNSKTLITINRN 243
           +W  KT +TI RN
Sbjct: 77  RWRDKTFVTIERN 89


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 451 NATPLLNFLKGGRITEPLLIIQ 386
           N+TPLL  L GG  T   L+I+
Sbjct: 119 NSTPLLKKLYGGNSTIIFLLIR 140


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 506 IHNSVLPNKNMITHL 462
           I   +L N+N+ITH+
Sbjct: 779 IDEKILENQNIITHM 793


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 231 CNKCLGVPFSKYK 193
           CNKC+G    K++
Sbjct: 87  CNKCIGCSAEKFE 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,412
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)