Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k24f
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47260.1 68414.m05232 bacterial transferase hexapeptide repea...    38   0.004
At5g66510.1 68418.m08386 bacterial transferase hexapeptide repea...    34   0.068
At1g19580.1 68414.m02439 bacterial transferase hexapeptide repea...    34   0.089
At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative...    30   1.1  
At5g63510.1 68418.m07972 bacterial transferase hexapeptide repea...    30   1.5  
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea...    29   3.4  
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    28   5.9  
At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containi...    27   7.8  

>At1g47260.1 68414.m05232 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 278

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/95 (23%), Positives = 43/95 (45%)
 Frame = +3

Query: 345 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 524
           ++RGD+ N+  G    I   +++       S  V   P  +GD+V VG + V++   V  
Sbjct: 84  VLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKV--LPTLIGDNVTVGHSAVIHGCTVED 141

Query: 525 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
             ++G    +    V++   M+   S++   T +P
Sbjct: 142 DAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIP 176


>At5g66510.1 68418.m08386 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 258

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 20/95 (21%), Positives = 42/95 (44%)
 Frame = +3

Query: 345 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 524
           ++RGD  ++  G    I   +++       S  V   P  +GD+V +G + V++   V  
Sbjct: 84  VLRGDANSISVGAGTNIQDNALVHVAKTNLSGKV--LPTVIGDNVTIGHSAVLHGCTVED 141

Query: 525 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
             YIG +  +     ++   M+   +++   T +P
Sbjct: 142 EAYIGTSATVLDGAHVEKHAMVASGALVRQNTRIP 176


>At1g19580.1 68414.m02439 bacterial transferase hexapeptide
           repeat-containing protein contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 275

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 22/95 (23%), Positives = 42/95 (44%)
 Frame = +3

Query: 345 IIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGS 524
           ++RGD+  V  G    I   S++       S  V   P  +GD+V +G + V++   V  
Sbjct: 84  VLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKV--HPTIIGDNVTIGHSAVLHGCTVED 141

Query: 525 YVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
             +IG    +    V++   M+   +++   T +P
Sbjct: 142 ETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIP 176


>At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative
           similar to GDP-mannose pyrophosphorylase [Arabidopsis
           thaliana] GI:3598958; contains Pfam profile PF00483:
           Nucleotidyl transferase
          Length = 331

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 459 LQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVL 572
           L  GD++ +G   V  +AV+G    IG +VVIG  CV+
Sbjct: 226 LATGDNI-IGNVLVHESAVIGEGCLIGPDVVIGPGCVI 262


>At5g63510.1 68418.m07972 bacterial transferase hexapeptide
           repeat-containing protein contains similarity to
           acetyltransferase; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (four repeats)
          Length = 252

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
 Frame = +3

Query: 303 NIVLHGKVIVQ------SDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQ 464
           N+VL G+V V       + A++RGDL  +  G    + +  V+   +     G+    + 
Sbjct: 77  NVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSS-PTGLPAATI- 134

Query: 465 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVP 629
           +  +V VG  +++ +        I    +IG+  +L +  ++E  S+L A ++VP
Sbjct: 135 IDRYVTVGAYSLLRSCT------IEPECIIGQHSILMEGSLVETRSILEAGSVVP 183


>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
           repeat-containing protein similar to SP|P32203
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) {Yersinia
           enterocolitica}; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 299

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 465 MGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIED 596
           +G  V +G NTV     +GS V IG +  IG  C + D C+I +
Sbjct: 114 LGAEVHIGSNTV-----IGSSVKIGPSTKIG-NCSIGDLCVIHN 151


>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 258 RQFLHIPIYCNKCLGVPFSKYKIMVSIIFYILRTFDDSQ 142
           R+   + I C   +G+P S +KI+  ++F++L      Q
Sbjct: 391 REIQPLLISCLAEIGIPESTFKILCQVVFHVLHELSSYQ 429


>At5g59200.1 68418.m07419 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 590

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 518 YNSCIHNSVLPNKNMITHLQGKKCD 444
           Y+  IHNSVLP+  +IT +  K CD
Sbjct: 161 YHRMIHNSVLPDNYVITSVL-KACD 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,906
Number of Sequences: 28952
Number of extensions: 243870
Number of successful extensions: 478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)