Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k22r
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    54   2e-08
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    39   8e-04
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    33   0.042
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.2  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   1.6  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    27   2.8  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.8  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   6.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    23   8.3  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    25   8.4  

>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
 Frame = -1

Query: 465 VEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSS 286
           VE FA T  +    EM + ++   K++        RI      +L    S +  +E +  
Sbjct: 314 VELFAWTHPSRS-SEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAWMP 372

Query: 285 SQQKYATIANVSLSGDFISKRLMFTYVDNKVTKFPHILSGTLLNVPKFLACVLE----QD 118
           ++Q Y  I + S   ++ ++RL+  Y ++K + F H L+GT   +P+ +  +LE    +D
Sbjct: 373 ARQSYGEITSASNCLEYQARRLLTRYRNDKDSGFVHTLNGTAAAIPRLIIAILENHQQED 432

Query: 117 NDFCVPDILKP 85
               VP+ L P
Sbjct: 433 GTVKVPETLVP 443


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 11/168 (6%)
 Frame = -1

Query: 555 LPLKYFNMGRQYVPVAS----DFNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQ 388
           LPLKY      Y   A     D   +  V     +E F +T       E    +I   + 
Sbjct: 259 LPLKYAGYSTCYRREAGSHGRDAWGIFRVHAFEKIEQFVLTDPEKSW-EAFTEMINHAED 317

Query: 387 YYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIANVSLSGDFISKRLMFTY 208
           +Y   +  +RI    +  LN   + +  +E +   Q +Y  + + S   D+ S+ L    
Sbjct: 318 FYKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQGEYKELVSCSNCTDYQSRNLEIRC 377

Query: 207 ----VDNKVTKFPHILSGTLLNVPKFLACVLEQ---DNDFCVPDILKP 85
               + ++  K+ H L+ TL    + L C+LE     +   VP +L+P
Sbjct: 378 GVKKMGDREKKYVHCLNSTLCATERALCCILENYQTPDGVNVPKVLQP 425


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
 Frame = -1

Query: 723  HCEGCGINHTNPDTVFILHH--NEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLP 550
            H  G G+N T  DTV  + H  N    + +  R H  G   + +      +  L  K++ 
Sbjct: 1799 HVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMG 1858

Query: 549  LKYFNMGRQYVPVASDFNSLLTVSQAAVVEFFAVT 445
            L+ F M      V      L ++    +++ F  T
Sbjct: 1859 LQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTT 1893


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
 Frame = -1

Query: 528  RQYVPVASDFNS-LLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRIS 352
            RQ V V    N+ LLT  Q++ + F  +T  + D+D ++   +  L+ +  R      I 
Sbjct: 1119 RQEVYVLKKQNAMLLTQLQSSNLNFAEITSPSPDLDSVMKLGLSDLQNHVKRISKEMEI- 1177

Query: 351  MTAAHQLNMWESLRLSVEMYSSSQ-----QKYATIANVSLSGDFISKR 223
            ++   QL   E+ +L   + SS++     Q+  T  +VS + + + +R
Sbjct: 1178 ISCQRQLLFLENKKLKRTVESSNRVIADLQRGITEKDVSSTSESVGER 1225


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 156 NVPKFLACVLEQDNDFCVPDILKP 85
           +V +FLAC+ +  ++F  PD L+P
Sbjct: 373 DVTQFLACLAQASHEFVPPDALEP 396


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  CLSYILQTPIFRFQYIWNTKVIIL 123
           C SY+++  + R +Y+W T +  L
Sbjct: 67  CCSYVIRKALIRKEYLWRTVITYL 90


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 484  C*KTIKIRCNWNILSTHIEILKRQYFWIQNIFSM 585
            C ++  I C W  LST +  LK + F   N+  M
Sbjct: 946  CQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVM 979


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 294 YSSSQQKYATIANVSLSGDFISKRLMFTYV--DNKVTKFP 181
           Y + ++KYA+ AN +  GD+ S     T    D+  T FP
Sbjct: 325 YETLKEKYASAANYTGDGDYSSSPATLTCPADDSYFTSFP 364


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 22.6 bits (46), Expect(2) = 8.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 732 EKCHCEGCGINHTNPDTVFILHH 664
           + C C GC  +  N  T+  L+H
Sbjct: 332 DNCECLGCLTHPNNATTLAALNH 354



 Score = 21.0 bits (42), Expect(2) = 8.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 672 LHHNEDTQINSDSRLHLTGGGSLCSYMAYHAKNV 571
           LHH    ++NS +   LT      S   Y + +V
Sbjct: 368 LHHTFKHEVNSSNNYELTNDELAASSPLYTSSSV 401


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 LKDTFAMVAYFCWELEYISTDN 310
           ++D  A+V YF W  EY+++ N
Sbjct: 316 IRDGCALVEYFAWLDEYLNSGN 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,329
Number of Sequences: 5004
Number of extensions: 68596
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)