Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22r
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 57 2e-08
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 46 2e-05
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 44 9e-05
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 37 0.014
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243... 33 0.31
11_06_0187 - 21029511-21029857,21031444-21031739,21032270-210323... 29 3.8
09_02_0394 + 8531930-8531946,8532084-8532245,8532865-8533070,853... 29 3.8
08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319 28 6.6
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 28 6.6
02_05_1022 + 33570664-33570976,33572206-33573440,33573873-335740... 28 6.6
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873... 28 8.8
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 56.8 bits (131), Expect = 2e-08
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Frame = -1
Query: 591 AYHAKNVLYPKVLPLKYFNMGRQYVPVAS----DFNSLLTVSQAAVVEFFAVTKAATDID 424
AYH + +YP LP++Y + A D + V Q +E F VT +
Sbjct: 190 AYHLGDRIYPAELPIRYAGYSTCFRKEAGSHGRDTAGIFRVHQFEKIEQFCVTSPNDNES 249
Query: 423 -EMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIANVSL 247
EM + +I+ + +Y +++ + LN + + +E + + + Y + + S
Sbjct: 250 WEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSN 309
Query: 246 SGDFISKRLMFTYV----DNKVTKFPHILSGTLLNVPKFLACVLE---QDNDFCVPDILK 88
DF ++RL Y D + +F H+L+ TL + L C+LE ++N VP L+
Sbjct: 310 CTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTLTATERTLCCILENFQRENGVEVPKALQ 369
Query: 87 P 85
P
Sbjct: 370 P 370
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Frame = -1
Query: 504 DFNSLLTVSQAAVVEFFAVTKAATDID-EMLDNLIEILKQYYSRFDYHFRISMTAAHQLN 328
D + V Q +E F VT + EM + +I+ + +Y +++ + LN
Sbjct: 264 DTAGIFRVHQFEKIEQFCVTSPNDNESWEMHEEMIKNSEDFYKEIGLPYQLVSIVSGALN 323
Query: 327 MWESLRLSVEMYSSSQQKYATIANVSLSGDFISKRLMFTYV----DNKVTKFPHILSGTL 160
+ + +E + + + Y + + S DF ++RL Y D + +F H+L+ TL
Sbjct: 324 DAAAKKYDLEAWFPASKTYRELVSCSNCTDFQARRLGIGYGQKKNDEQSKQFVHMLNSTL 383
Query: 159 LNVPKFLACVLE---QDNDFCVPDILKP 85
+ L C+LE ++N VP L+P
Sbjct: 384 TATERTLCCILENFQKENGVEVPKALQP 411
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 44.4 bits (100), Expect = 9e-05
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 24/191 (12%)
Frame = -1
Query: 585 HAKNVLYPKVLPLKYFNMGRQYVPVASDFNS----LLTVSQAAVVEFFAVTKAATDIDEM 418
H ++L LP KY + A + L V Q + VE F + + D+
Sbjct: 348 HMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPE-ESDKC 406
Query: 417 LDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIANVSLSGD 238
+ LI I ++ Y+ HF+ A L + +E + +Y I++ S D
Sbjct: 407 HEELITIEEELYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLDRYGEISSASNCTD 466
Query: 237 FISKRLMFTYVDNKV----------------TKFPHILSGTLLNVPKFLACVLE----QD 118
+ S+RL + + T+F H L+ T + VP+ + C+LE +D
Sbjct: 467 YQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFVHTLNATAVAVPRLIICILENFQQED 526
Query: 117 NDFCVPDILKP 85
+P+ L+P
Sbjct: 527 GTVVIPEPLRP 537
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = -1
Query: 723 HCEGCGINHTNPDTVFILHH--NEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLP 550
H G G+N T+ DT+ + H N + + R H G + + + L KV+
Sbjct: 2236 HVGGLGLNLTSADTLVFMEHDWNPMKDLQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMS 2295
Query: 549 LKYFNMGRQYVPVASDFNSLLTVSQAAVVEFFAVTKAA 436
L+ F + + ++ SL T++ +++ FA T A+
Sbjct: 2296 LQRFKVSVANAVINAENASLKTMNTDQLLDLFASTPAS 2333
>11_06_0655 -
25923171-25923185,25923208-25923432,25923865-25924324,
25924330-25924985
Length = 451
Score = 32.7 bits (71), Expect = 0.31
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = -1
Query: 510 ASDFNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFD----YHFRISMTA 343
AS S+ + + V F KA TD+D++++NL + ++ ++ D HF T
Sbjct: 162 ASSVPSITSAAMVTSVPFNETKKAETDMDKVVENLDKTIQDLCTKIDRMLERHFATPSTE 221
Query: 342 AHQLNMWESLRLSV 301
A N+ ++ +L +
Sbjct: 222 AGSTNLVDTAKLGM 235
>11_06_0187 -
21029511-21029857,21031444-21031739,21032270-21032345,
21032714-21032836,21033200-21033228,21033823-21034328
Length = 458
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 720 CEGCGINHTNPDTVFILHHNEDTQINSDSR-LHLTGGGSLCSYMAYHAKNV 571
C GCG + HH + Q+ ++ + + GGGSLC++ + H N+
Sbjct: 192 CHGCGTD---------CHHPTEEQMGKEAGGISVGGGGSLCAHASSHRSNL 233
>09_02_0394 +
8531930-8531946,8532084-8532245,8532865-8533070,
8533174-8533304,8533496-8533623,8534191-8534430,
8535112-8535358
Length = 376
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 498 NSLLTVSQAAVVEFFAVT--KAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNM 325
N+L+T Q A E K IDE+L+ +++ILKQ+ + + I+ N+
Sbjct: 199 NALITKMQHAATEILKEKQLKDPMGIDEVLETILQILKQFMGLCEDNSWINYLVPENANV 258
Query: 324 WESL 313
+ L
Sbjct: 259 YAQL 262
>08_02_0443 - 17207513-17207665,17207674-17207762,17207923-17208319
Length = 212
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = -1
Query: 516 PVASDFNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAH 337
P++ +L+ Q AV + A E +NL++I K+ R +FR +
Sbjct: 69 PLSPGTQALMCDEQDAVFQDSKAPDATPSTTE--ENLVDIFKEQEKRVLTNFRDYLCKLA 126
Query: 336 QLNMWESLRLSVEMYSSSQQKYATIANVS 250
+ L+LS+ + S+Q +A N S
Sbjct: 127 TCGKLQELKLSLASTNCSEQAFADHGNNS 155
>07_01_0542 +
4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 28.3 bits (60), Expect = 6.6
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Frame = -1
Query: 609 SLCSYMAYHAKNVLYPKVLPLKY--FNMGRQYVPVASDFNSLLTVSQAAVVEFFAVTKAA 436
S Y HA+N V Y FN+G + + +L+ + +F + +AA
Sbjct: 268 STVGYGDMHAENT-GEMVFTTTYMLFNLGLTAY-IIGNMTNLVVHGTSRTRKFRDMIQAA 325
Query: 435 TDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIAN 256
T + + +Q S FR + HQ +E+L +++ S + + N
Sbjct: 326 TSFAQRHQLPARLQEQMVSHLSLKFRTNSEGLHQQETFEALPKAIKSSISHHLFFGLVQN 385
Query: 255 VSLSGDFISKRLMFTYV 205
V L + +S L+F V
Sbjct: 386 VYLF-EGVSNDLIFQLV 401
>02_05_1022 +
33570664-33570976,33572206-33573440,33573873-33574013,
33574242-33574796,33574914-33575015
Length = 781
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 510 ASDFNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFD 370
AS S+ + + V F KA TD+D+ ++NL + ++ ++ D
Sbjct: 277 ASSIPSITSAAMVTSVPFNETKKAETDMDKAVENLDKTIQDLCTKID 323
>10_08_0391 +
17486109-17486210,17487032-17487129,17487331-17487361,
17487655-17487707,17489254-17489402,17489828-17489898,
17489988-17490131,17490249-17490309,17492180-17492265,
17492839-17492926,17494012-17494142,17494266-17494394
Length = 380
Score = 27.9 bits (59), Expect = 8.8
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = -1
Query: 501 FNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMW 322
+NSLLT AV E F + +A I M E++ + YH R+ A +LN W
Sbjct: 178 YNSLLTFIDKAVEEGF-INTSARRIIVMAPTAEELMDKLEEYVPYHDRV----ASKLN-W 231
Query: 321 ESLRLSVE 298
E L VE
Sbjct: 232 EMGHLEVE 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,513,672
Number of Sequences: 37544
Number of extensions: 372691
Number of successful extensions: 818
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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