Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22r
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 3.9
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 29 3.9
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_29151| Best HMM Match : PDH (HMM E-Value=0) 29 5.1
SB_44664| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27) 28 6.8
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_31536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_12293| Best HMM Match : OATP (HMM E-Value=0) 28 6.8
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 28 6.8
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1525
Score = 31.5 bits (68), Expect = 0.73
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = -1
Query: 687 DTVFILHHNEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLPLKYFNMGRQYVPVA 508
D VF+L H+ + ++ H+T G + + +H N + L F+ + + V
Sbjct: 1413 DLVFVLAHSNEELDRVFAKDHVTSGKAFAFAVKWHRGNKWRWRNLTNNLFSKILRPLDVI 1472
Query: 507 SDFNSLLTVSQAAVVEFFAVTKAATDIDEML 415
+N L T VE + + DID ++
Sbjct: 1473 VKWNVLYTFGTVVQVESDCIAEGIVDIDALI 1503
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 29.5 bits (63), Expect = 2.9
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = -1
Query: 573 VLYPKVLPLKYFNMGRQYVPVASDFNSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEIL 394
+LY +LP N R PV ++ ++T+ + +V+F T I E ++ ++E+L
Sbjct: 890 LLY-SILPASVANDLRLRKPVNANKYEIVTIMFSGIVDF---TNYCNKIKEPME-IVEML 944
Query: 393 KQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYA-TIANVSLSGDFISKRLM 217
+ Y+ FD S +++ ++V + K+A IAN++L ISK +
Sbjct: 945 NEVYTEFD-QLTDSNDDIYKVETVGDKYMAVSGLPTRCDKHALNIANLALDMIDISKGMK 1003
Query: 216 FTYVDNKVT 190
+ +VT
Sbjct: 1004 AKGIQLQVT 1012
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 69 TNSNFQVSIYLEHKSHY-LALKHKPKILVHSTM 164
T+++F I+L+HK+H+ LAL K ++ H +
Sbjct: 196 TSAHFTSDIHLKHKNHFRLALPRKSPLMYHRNL 228
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 225 RLMFTYVDNKVTKFPHILSGTLL 157
++ YV NKVTK PHI G+++
Sbjct: 118 QISMNYVHNKVTKTPHICGGSVV 140
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 711 CGINHTNPDTVFILHHNEDTQINSDSRLH 625
C N T P V L +NE +SDSR+H
Sbjct: 700 CSANGTEPFNVIWLKNNEVYDFSSDSRVH 728
>SB_29151| Best HMM Match : PDH (HMM E-Value=0)
Length = 349
Score = 28.7 bits (61), Expect = 5.1
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = -1
Query: 321 ESLRLSVEMYSSSQQKYATIANVSLSGDFISKRLMFTYVDNKVTKFPHILSGTLLNVPKF 142
E+L+L E +S + YA + S + +L T N+V F ++ KF
Sbjct: 15 EALKLGKEWFSGLNEVYAKRRELVFS---LCDKLNVTVNKNQVGMFVWAKLPNGISSEKF 71
Query: 141 LACVLEQDNDFCVPDI 94
+ VL + N F PDI
Sbjct: 72 IDDVLHEKNVFITPDI 87
>SB_44664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 729 KCHCEGCGINHTNPDTVFILHHNEDTQINSD--SRLH 625
+C CE CG+ +T + H N DT NS SRLH
Sbjct: 168 RCVCETCGLPYT------LCHSNPDTPCNSTPRSRLH 198
>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
Length = 514
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 62 IFYKLQFSGFNISGTQKSLSCSKTQAKNFGTFNNVPDRICGNFVTL 199
+++K+Q SG+ + SL+ T AK + P + GN + L
Sbjct: 193 VYFKIQLSGYEVHNAVFSLALQFTPAKPVTKWEASPQLMFGNLLCL 238
>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 729 KCHCEGCGINHTNPDTVFILHHNEDTQINSD--SRLH 625
+C CE CG+ +T + H N DT NS SRLH
Sbjct: 506 RCVCETCGLPYT------LCHSNPDTPCNSTPRSRLH 536
>SB_31536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 729 KCHCEGCGINHTNPDTVFILHHNEDTQINSDSRLHLTGGGSLCSYMAYH 583
K HC+ I++TN D F D +N D LH+ G S C H
Sbjct: 137 KSHCDRISISNTNNDRQFY----SDCNLNDDKDLHV-GYLSCCKNKCQH 180
>SB_12293| Best HMM Match : OATP (HMM E-Value=0)
Length = 1446
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 343 SCHTYPKMIIKPTVILLQNFYQIIQHFIYICSSFC 447
SC Y ++ +I F+Q++ +Y CS +C
Sbjct: 1045 SCLEYNNELLSYLLIACGLFFQVVSTLLYFCSYYC 1079
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 62 IFYKLQFSGFNISGTQKSLSCSKTQAKNFGTFNNVPDRICGNFVTL 199
+++K+Q SG+ + SL+ T AK + P + GN + L
Sbjct: 336 VYFKIQLSGYEVHNAVFSLALQFTPAKPVTKWEASPQLMFGNLLCL 381
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 327 MWESLRLSVEMYSSSQQKYATIANVSLSGDF 235
M +SL S+ +SSSQ + I +VS SG+F
Sbjct: 391 MVQSLEKSLSDFSSSQNELINIGDVSSSGEF 421
>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 729 KCHCEGCGINHTNPDTVFILHHNEDTQINSD--SRLH 625
+C CE CG+ +T + H N DT NS SRLH
Sbjct: 54 RCVCETCGLPYT------LCHSNPDTPCNSTPRSRLH 84
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 717 EGCGINHTNPDTVFILHHNEDTQINSDSRLHLTGGGSLCSYMA 589
+GCG NHT T+ + ++ E+T + +++ GG +L + A
Sbjct: 79 DGCGRNHTRDVTLAVKYNPENTTMVANASSVCIGGVALLNCSA 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,245,245
Number of Sequences: 59808
Number of extensions: 464876
Number of successful extensions: 1216
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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