Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22r
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 50 2e-06
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 50 2e-06
Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 36 0.030
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 36 0.030
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 31 1.1
AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine re... 31 1.1
Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z99281-22|CAE18024.1| 181|Caenorhabditis elegans Hypothetical p... 29 2.6
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 29 2.6
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 29 3.4
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 29 3.4
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 29 4.5
U39649-1|AAA80383.2| 437|Caenorhabditis elegans Temporarily ass... 28 7.8
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 50.0 bits (114), Expect = 2e-06
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 4/186 (2%)
Frame = -1
Query: 669 HHNEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLPLKYFNMGRQY---VPVASDF 499
H + T +S L+G + A+ LP++ ++ R + + ++
Sbjct: 222 HPIQYTLAGEESHTKLSGTAEM-GIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASE 280
Query: 498 NSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWE 319
L V + + VE F V+ E LD L+E+ K + H R + +L
Sbjct: 281 AKLYRVHEFSKVEMFVVSTPEQSAAE-LDYLVEVQKGTFQALGVHCRQLEMPSEELGASA 339
Query: 318 SLRLSVEMYSSSQQKYATIANVSLSGDFISKRLMFTY-VDNKVTKFPHILSGTLLNVPKF 142
+ + +E + ++ Y +++ S DF S+RL Y + TK+ H +GT L +
Sbjct: 340 ARKFDIEAWMPGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRA 399
Query: 141 LACVLE 124
L VLE
Sbjct: 400 LISVLE 405
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 50.0 bits (114), Expect = 2e-06
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 4/186 (2%)
Frame = -1
Query: 669 HHNEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLPLKYFNMGRQY---VPVASDF 499
H + T +S L+G + A+ LP++ ++ R + + ++
Sbjct: 222 HPIQYTLAGEESHTKLSGTAEM-GIAAFLRGRTFNQDQLPIRLVSLSRCFRTEISKSASE 280
Query: 498 NSLLTVSQAAVVEFFAVTKAATDIDEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWE 319
L V + + VE F V+ E LD L+E+ K + H R + +L
Sbjct: 281 AKLYRVHEFSKVEMFVVSTPEQSAAE-LDYLVEVQKGTFQALGVHCRQLEMPSEELGASA 339
Query: 318 SLRLSVEMYSSSQQKYATIANVSLSGDFISKRLMFTY-VDNKVTKFPHILSGTLLNVPKF 142
+ + +E + ++ Y +++ S DF S+RL Y + TK+ H +GT L +
Sbjct: 340 ARKFDIEAWMPGRKLYGEVSSASNCTDFQSRRLGIKYKTADGTTKYAHTCNGTALASTRA 399
Query: 141 LACVLE 124
L VLE
Sbjct: 400 LISVLE 405
>Z68882-1|CAA93105.1| 487|Caenorhabditis elegans Hypothetical
protein C47E12.1 protein.
Length = 487
Score = 41.5 bits (93), Expect = 6e-04
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 9/167 (5%)
Frame = -1
Query: 591 AYHAKNVLYPKVLPLKYFNMG---RQYVPV-ASDFNSLLTVSQAAVVEFFAVTKAATDID 424
AYH + LP+KY + RQ V D + V Q +E F + +
Sbjct: 278 AYHRNEWIKETELPIKYAGVSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVLCSPNDNES 337
Query: 423 -EMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIANVSL 247
+ D +I + YY +++ + +LN + + +E + Y + + S
Sbjct: 338 WTLFDEMIGNAESYYQELQIPYQVVNIVSGELNNAAAKKFDLEAWFPGSGAYRELVSCSN 397
Query: 246 SGDFISKRLMFTYVDNK----VTKFPHILSGTLLNVPKFLACVLEQD 118
D+ S+RL Y K F H+L+ T+ + + +LE +
Sbjct: 398 CLDYQSRRLKVRYGQTKKLSGEVPFVHMLNATMCATTRVICAILENN 444
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = -1
Query: 723 HCEGCGINHTNPDTVFILHH--NEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLP 550
H G G+N T DTV L H N + + R H G + + + KV+
Sbjct: 1384 HVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMS 1443
Query: 549 LKYFNMGRQYVPVASDFNSLLTVSQAAVVEFFAV 448
L F + + +D S++T+ ++ F +
Sbjct: 1444 LAKFKLNTAQALIGADNTSMMTMETGELMNMFTL 1477
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical protein
F15D4.1 protein.
Length = 1529
Score = 35.9 bits (79), Expect = 0.030
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Frame = -1
Query: 723 HCEGCGINHTNPDTVFILHH--NEDTQINSDSRLHLTGGGSLCSYMAYHAKNVLYPKVLP 550
H G G+N T DTV L H N + + R H G + + + KV+
Sbjct: 1384 HVGGVGLNLTGADTVIFLDHDWNPMKDLQAIDRAHRLGQTRNVNVYRLITQGTVEEKVMS 1443
Query: 549 LKYFNMGRQYVPVASDFNSLLTVSQAAVVEFFAV 448
L F + + +D S++T+ ++ F +
Sbjct: 1444 LAKFKLNTAQALIGADNTSMMTMETGELMNMFTL 1477
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 31 CIHFITFCLSYILQTPIFRFQYIWNTKVIILL 126
C+ F++ CL+ ++ P+FRF + I L+
Sbjct: 13 CLSFVSICLNLLIFIPVFRFAFFGKKSSIYLI 44
>AC024799-6|AAK72315.1| 306|Caenorhabditis elegans Serpentine
receptor, class x protein5 protein.
Length = 306
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 31 CIHFITFCLSYILQTPIFRFQYIWNTKVIILL 126
C+ F++ CL+ ++ P+FRF + I L+
Sbjct: 13 CLSFVSICLNLLIFIPVFRFAFFGKRSSIYLI 44
>Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical
protein F25H2.2 protein.
Length = 578
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = -1
Query: 426 DEMLDNLIEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQ---QKYATIAN 256
DE+ +I + RFDY SM H + SL +++ Y++ Q ++Y T+ N
Sbjct: 132 DELTMIVISVEDPDMDRFDYGEESSMAYGHDYSENRSLPVTIPSYNTVQDSLERY-TVFN 190
Query: 255 VSLSGDFISKRLMFTYVD 202
+ ++G + R +V+
Sbjct: 191 IHMAGRQLGSRRYSEFVE 208
>Z99281-22|CAE18024.1| 181|Caenorhabditis elegans Hypothetical
protein Y57G11C.41 protein.
Length = 181
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 107 QKSLSCSKTQAKNFGTFNNVPDRICGNFVTL 199
+K+ C+K+ A+ F TF+N+ ++C N V L
Sbjct: 137 EKTPRCTKSDAEKFKTFSNLIGQMCQNNVEL 167
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/107 (26%), Positives = 45/107 (42%)
Frame = -1
Query: 405 IEILKQYYSRFDYHFRISMTAAHQLNMWESLRLSVEMYSSSQQKYATIANVSLSGDFISK 226
+EI +QY F + F + + A +W R + Y S ++ + + GD +
Sbjct: 443 VEICQQYSPVFRHFFYTNFSTAQ---IW---RQKIINYRQSLATWSIVCYIVGLGDRHAS 496
Query: 225 RLMFTYVDNKVTKFPHILSGTLLNVPKFLACVLEQDNDFCVPDILKP 85
++F D K+ F HI G +L K V EQ D+L P
Sbjct: 497 NILF---DQKLCTFVHIDLGMILEYSKRTLPVPEQVPFRITRDVLDP 540
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -2
Query: 725 VIVRAVASTTLILIQYLYCIIMK----ILKLIQTVDFI*QVVVHCVLIWHIMLKMFCIQK 558
++ + V + L++I +L C+ + + ++ +I C + W I+ K C
Sbjct: 498 LLTQFVLTWPLVVIAFLECMAINWVYGVDNMLDNAKWIVGYWPPCYIFWKILFKFICPMV 557
Query: 557 YCLLSISIWVD 525
Y + +W+D
Sbjct: 558 YLAILCFLWLD 568
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -2
Query: 725 VIVRAVASTTLILIQYLYCIIMK----ILKLIQTVDFI*QVVVHCVLIWHIMLKMFCIQK 558
++ + V + L++I +L C+ + + ++ +I C + W I+ K C
Sbjct: 498 LLTQFVLTWPLVVIAFLECMAINWVYGVDNMLDNAKWIVGYWPPCYIFWKILFKFICPMV 557
Query: 557 YCLLSISIWVD 525
Y + +W+D
Sbjct: 558 YLAILCFLWLD 568
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 6 ITMVQKKSVYSFYYILF-KLYFTNSNFQVSIYLEHKSHYLALKHKPKILVHSTMYLTEYV 182
I M Q + YS ++F K NFQ S +++H H + H I VH +YL+ V
Sbjct: 540 IVMWQFTTRYSLEDLIFVKEQKFGRNFQ-STFIKHIVHGINYIHNSSIKVHGALYLSNCV 598
>U39649-1|AAA80383.2| 437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 249 protein.
Length = 437
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 316 RFPHVKLMSSCHTYPKMIIKPTVILLQNFY 405
RFP K++ CH +P+ ++ P+ L +Y
Sbjct: 102 RFPQCKILFYCH-FPQQLVTPSRFFLYRWY 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,781
Number of Sequences: 27780
Number of extensions: 382833
Number of successful extensions: 1104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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