Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k22r
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 615 GGSLCSYMAYHAKNVLYPKVLPLKYFNMGR 526
           G SLC   AY ++   Y  VL +  F+M R
Sbjct: 110 GVSLCKIRAYVSEMSSYVSVLTIVAFSMER 139


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 628 SFNRWWFIVFLYGISC 581
           SFN WW I++ + I C
Sbjct: 2   SFNIWWLILY-FSIVC 16


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 702 NHTNPDTVFILHHNEDTQINSDSRLHLTGGGSLC-SYMAY 586
           NHT   T+   HH+   Q  S   LH     +L  SY +Y
Sbjct: 340 NHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSY 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,692
Number of Sequences: 438
Number of extensions: 4410
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)