Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k22f
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...   101   1e-22
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   3.6  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    26   3.6  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   4.7  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   6.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   8.3  

>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score =  101 bits (241), Expect = 1e-22
 Identities = 55/117 (47%), Positives = 67/117 (57%)
 Frame = +1

Query: 19  KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 198
           +++K+H    H   R RV  R  DLD+I  DL E  +EK     +D DLPG  QHYC+ C
Sbjct: 6   RKRKHHSNGNHALFRTRVYGR--DLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCIEC 61

Query: 199 ARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQN 369
           ARYF   QAL  H K KVHKRRLK L  EPYT EE+E A   G  K +   K+   +
Sbjct: 62  ARYFDSSQALLVHKKGKVHKRRLKNLREEPYTQEEAEAAVNIGQPKQSVASKLADNS 118


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 169 LADLNQLFGSVIFQHFLPLNLGLFHP 92
           L +L  LF      +FLPL +GLF+P
Sbjct: 73  LVELLSLFYCAYVMYFLPLEVGLFNP 98


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 184 YCLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEES 306
           YCLH   Y +D   +  H  +   K R+K  +L   T E S
Sbjct: 161 YCLHALSYLLDFLEVTRHVPSLYGKLRIKKSQLNTATKEIS 201


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 97  EIDQDLKEENA----EKLLNQKVDLDLPGA 174
           E+D + KEEN     EKL N KVD + P A
Sbjct: 121 EVDAEPKEENKKEIPEKLKNVKVDTENPSA 150


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 97  EIDQDLKEENAEKLLNQKVDLDLP 168
           EID D+K+E  + L  QK+  ++P
Sbjct: 189 EIDSDIKDEKQKSLEEQKIAPEIP 212


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 181 HYCLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKR-KI 357
           H    C R FID  AL D       +    +  +E  T    +R      F+T TKR K 
Sbjct: 9   HTPRRCNR-FIDSAALIDCTNKTNQREHSPSFSIEIPTTPSRKRTLASSHFQTPTKRIKY 67

Query: 358 VSQNIEKSQTD 390
               +++ +TD
Sbjct: 68  ELGELQEEKTD 78


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 163 DLNQLFGSVIFQHFLPLNLGLFHPNLSFCY 74
           DL+++ G V +  ++ L +GLF   + F Y
Sbjct: 439 DLDEIVGMVFYGRYIVLLMGLFSMYVGFVY 468


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 73  RNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 174
           + R+K +++   D    +A+K++NQ++ + LP A
Sbjct: 300 KQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSA 333


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 187 CLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESERAA 318
           C+ C + F    ALN H+K++V +  L+        +  S + A
Sbjct: 630 CVTCNQRFARMDALNRHYKSEVGQNCLRTATERGIQVPPSRKTA 673


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 577 IRSDINIIFCCLGTIDEKS*ISFGGYQ*VSCFEQCV 470
           + +D+  IFC    +DE + I F G + +S F+  V
Sbjct: 120 LNTDLPHIFCLNDPLDELTLIKFDGKKILSLFDSIV 155


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 184 YCLHCARYFIDEQALNDHFKTKVHKRRLKALE 279
           YC  C ++F        H K+K H + +K ++
Sbjct: 244 YCEVCQKFFGKITVFEAHKKSKAHNKAVKRMQ 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,692
Number of Sequences: 5004
Number of extensions: 41573
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)