Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22f
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 65 5e-11
08_01_1026 - 10366534-10368021,10368505-10368525 31 0.91
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997 31 0.91
10_06_0183 - 11562576-11562824,11563894-11564000,11564494-115645... 30 1.2
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 30 1.2
06_03_1489 + 30492702-30493760 30 1.6
05_04_0119 - 18169729-18169887,18170515-18170653,18170728-181709... 30 1.6
11_08_0099 + 28342765-28342872,28343016-28343167,28343461-283437... 28 4.8
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 28 4.8
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 4.8
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 28 6.4
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 28 6.4
03_06_0478 + 34214412-34214846 28 6.4
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 27 8.5
02_05_0202 + 26708049-26709074 27 8.5
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 151 VDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKALE-LEPYTIEESERAAGHG 327
VD DLPG Q YCLHC RYF E +H+++K HK+R+K + P+T ++E AAG G
Sbjct: 54 VDEDLPGMGQFYCLHCDRYFASESVKEEHYRSKRHKKRIKQMSGPAPHTQLDAELAAGMG 113
>08_01_1026 - 10366534-10368021,10368505-10368525
Length = 502
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 166 PGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKALEL 282
P AA C C E+A+ DH K HK++ AL L
Sbjct: 46 PKAADLTCAVCGITSTGEKAMQDHLNGKSHKKKAAALAL 84
>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
Length = 471
Score = 30.7 bits (66), Expect = 0.91
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 28 KYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKL-LNQKVDLDLPGAAQHYCLHCAR 204
KY + +RWR R L+ DL + +++ L K+ + PG A+ + LHC R
Sbjct: 49 KYGARTQLVSRRWRPLWRSAPLNLDVYDLSGQERKRVALASKILAEHPGPARRFSLHCFR 108
>10_06_0183 -
11562576-11562824,11563894-11564000,11564494-11564572,
11564659-11564745,11570563-11570817,11570922-11571071,
11571163-11571798
Length = 520
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 151 VDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKA 273
+ LD+PG A H+ C R LN F+ +V +R+LKA
Sbjct: 248 LQLDIPGTAFHHARKCRR------KLNSVFREEVKRRKLKA 282
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/124 (21%), Positives = 52/124 (41%)
Frame = +1
Query: 46 THLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQA 225
T ++R + K+ + + +L++ +KLL ++ ++ AA+ Y YFI E +
Sbjct: 1371 TLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQE-S 1429
Query: 226 LNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEKSQTDEDGDA 405
+ K + K L A+ +E R + + KI Q +E +T D
Sbjct: 1430 CEEAKKFQKIKMDLLAMLQRVKDVENLNR--NEKMQRKDMEEKIARQRMEIEETKRQRDE 1487
Query: 406 ILEE 417
+ E
Sbjct: 1488 LYHE 1491
>06_03_1489 + 30492702-30493760
Length = 352
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 19 KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEEN-AEKLLNQKVDLDLPG 171
KRK+ + K + K +D I D ++N AEK LNQ VD PG
Sbjct: 253 KRKELLLNQHNSKDTQEAKEIKPSIDSIRYDESKQNGAEKRLNQLVDAKDPG 304
>05_04_0119 -
18169729-18169887,18170515-18170653,18170728-18170974,
18171585-18171968,18172251-18172540,18172884-18173295,
18173409-18173420,18173943-18174135
Length = 611
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 472 HTVQNTKPIGNPQKIFSSFHQWCQ 543
HT+ NT P+ + + S+H WC+
Sbjct: 492 HTMSNTLPVIYDRGLIGSYHDWCE 515
>11_08_0099 +
28342765-28342872,28343016-28343167,28343461-28343705,
28343790-28343921,28344047-28344973,28345057-28345187
Length = 564
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 443 MTMIYKTHFYTL-FKTRNLLVTPKRYSALFINGAKATENYVY-VTPYLDFP 589
+T++ YT FKT LL+TP + + + + + Y+ V+P++D P
Sbjct: 247 LTVVEVDAVYTKPFKTDTLLITPGQTTNVLVRANQGAGRYLLSVSPFMDAP 297
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/77 (28%), Positives = 30/77 (38%)
Frame = +1
Query: 43 DTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQ 222
DTHLK + N Q L E+N + +N + AA C C F +
Sbjct: 180 DTHLKGKKHQANT--------QALLEQNKKSSVNPESQGTKAAAATLICRVCQAKFTCQS 231
Query: 223 ALNDHFKTKVHKRRLKA 273
L H K H+ L+A
Sbjct: 232 DLQSHLKVMKHQLNLRA 248
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -2
Query: 354 FSFCCCFET--PVASSSL*LFYSIRFKL 277
FSFC E PV+SSS FYS+ FK+
Sbjct: 1660 FSFCRSMELKFPVSSSSASSFYSVTFKV 1687
>08_02_0744 - 20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +3
Query: 219 TSFE*SFQDKSP*TEIKSTRA*TLYYRR----VRESCWPREFQNSNKTKNC 359
T F+ SF D+SP +E K+ + T Y+ + +R+ C P++ C
Sbjct: 1344 THFKFSFDDESPLSEDKAKFSITCYFAKHFAALRKKCCPKDIDFIRSLSRC 1394
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 40 GDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQ 180
GD + + R RVR + L E+ + + A +NQ++D++L G Q
Sbjct: 52 GDPNFEVRERVRYTRDQLLELREIVDIPEAILRINQEIDIELHGEDQ 98
>03_06_0478 + 34214412-34214846
Length = 144
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +1
Query: 169 GAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATK 348
G+ C C+R F QAL H + + R AL L T +E+ + AT
Sbjct: 41 GSGDFVCKTCSRAFPSFQALGGHRTSHLRGRHGLALGLAAATAKETTKKVQEKPAAAATH 100
Query: 349 R-KIVSQNIEKSQ 384
I Q E Q
Sbjct: 101 ECHICGQGFEMGQ 113
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 166 PGAAQHYCLHCARYFIDEQALNDHFK 243
P QH CL C F QAL H +
Sbjct: 568 PAPQQHQCLRCPMVFPTGQALGGHMR 593
>02_05_0202 + 26708049-26709074
Length = 341
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 160 DLPGAAQ-HYCLHCARYFIDEQALNDHFKTKV 252
D+ G A H C +C R F QAL H K+ V
Sbjct: 254 DMDGKAPPHECPYCYRVFASGQALGGHKKSHV 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,938
Number of Sequences: 37544
Number of extensions: 232475
Number of successful extensions: 774
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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