Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22f
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-17|CAB60500.1| 128|Caenorhabditis elegans Hypothetical... 100 2e-21
U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical pr... 34 0.087
AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical ... 32 0.27
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 30 1.1
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 4.3
AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical ... 28 5.7
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 10.0
U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short for... 27 10.0
U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form... 27 10.0
U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical pr... 27 10.0
>AL132860-17|CAB60500.1| 128|Caenorhabditis elegans Hypothetical
protein Y56A3A.18 protein.
Length = 128
Score = 99.5 bits (237), Expect = 2e-21
Identities = 45/87 (51%), Positives = 57/87 (65%)
Frame = +1
Query: 85 KDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRR 264
KDLD+I +DLK E A KLL Q++D DLPG Q YC+ C R+F+DE+ H KTK+HK R
Sbjct: 21 KDLDQIHEDLKPEKAAKLLQQEIDYDLPGNGQFYCIECERHFVDEKTRQLHRKTKLHKNR 80
Query: 265 LKALELEPYTIEESERAAGHGSFKTAT 345
+K L+ PYT E+ A G G F T
Sbjct: 81 VKTLKEVPYTQAEANAAGGSGFFPAIT 107
>U41534-6|AAB47598.1| 375|Caenorhabditis elegans Hypothetical
protein C16A3.4 protein.
Length = 375
Score = 33.9 bits (74), Expect = 0.087
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Frame = +1
Query: 49 HLKKRWRVRNRKK---DLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDE 219
H K W N K+ +L I +L E A N + YC C + E
Sbjct: 25 HYKTEWHRYNLKRQAAELPAIGIELFNEKAASF-NPTKPVVAASVEPLYCKACRKSIKSE 83
Query: 220 QALNDHFKTKVHKRRLKALE 279
A+ DH +K HK K +E
Sbjct: 84 NAMTDHVASKKHKENEKKIE 103
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 163 LPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLK--ALELEPYTIE-ESERAAGHGSF 333
+ G+ C+ C F + DH+KT+ H+ LK A EL IE +E+AA
Sbjct: 1 MDGSTGFTCVTCRVVFETAELQRDHYKTEWHRYNLKRQAAELPAIGIELFNEKAASFNPT 60
Query: 334 K 336
K
Sbjct: 61 K 61
>AC006662-5|AAF39894.1| 501|Caenorhabditis elegans Hypothetical
protein H23L24.2 protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 121 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVH 255
EN E+ NQKV L L G L CA E+ L + + ++H
Sbjct: 134 ENEEQNQNQKVILSLDGGGLRVVLQCAILLAVERELGEPLRNRIH 178
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 22 RKKYHCGDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQKV 153
R+K H + + R R DLD+I +DLK E A KLL ++V
Sbjct: 128 REKCHVEERKHTISNKARKRPGTDLDQIHEDLKPEKAAKLLQKEV 172
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 136 LLNQKVDLDLPGAAQHYCLHCARYFID 216
LL+ DLP A+ C+HCA FID
Sbjct: 16 LLSTYTLADLPSCARAKCVHCAVDFID 42
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 136 LLNQKVDLDLPGAAQHYCLHCARYFID 216
LL+ DLP A+ C+HCA FID
Sbjct: 16 LLSTYTLADLPSCARAKCVHCAVDFID 42
>AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical
protein Y50E8A.16 protein.
Length = 807
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 253 HKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEKSQTD-EDGDAILEE 417
++R + E T E+ A+ +G+ TAT S S TD ED DA+ +E
Sbjct: 152 YERLTENTETAANTNVENGTASTNGTASTATPTAATSSTSRSSSTDEEDNDAVSKE 207
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 37 CGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLH--CARYF 210
C + +K+ K D+DE+ +++++ N KLLN ++ + A H A+ +
Sbjct: 826 CSEDAIKQLIINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATDAATHNAMAKIY 885
Query: 211 IDEQALNDHF 240
ID + F
Sbjct: 886 IDSNNNPERF 895
>Z71260-1|CAA95798.1| 744|Caenorhabditis elegans Hypothetical
protein F15C11.1 protein.
Length = 744
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 121 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLK 270
+ AEK+ D +P + C+ C R + AL H++T +R K
Sbjct: 285 DEAEKIRALVGDKAVPTTDPNQCILCRRVLSCKSALQMHYRTHTGERPFK 334
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 27.1 bits (57), Expect = 10.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 187 CLHCARYFIDEQALNDHFKTKVHK 258
C++C + F D L DH + + H+
Sbjct: 358 CIYCEKIFPDRNTLMDHMRKRNHR 381
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 82 KKDLDEIDQDLKEENAEKLLNQKVD 156
+K+ D+ D D +EEN + NQKVD
Sbjct: 614 EKEYDDKDSDEEEENEAEPNNQKVD 638
>U60113-1|AAB03334.1| 715|Caenorhabditis elegans SEM-4 short form
protein.
Length = 715
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 121 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLK 270
+ AEK+ D +P + C+ C R + AL H++T +R K
Sbjct: 256 DEAEKIRALVGDKAVPTTDPNQCILCRRVLSCKSALQMHYRTHTGERPFK 305
>U60112-1|AAB03333.1| 744|Caenorhabditis elegans SEM-4 long form
protein.
Length = 744
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 121 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLK 270
+ AEK+ D +P + C+ C R + AL H++T +R K
Sbjct: 285 DEAEKIRALVGDKAVPTTDPNQCILCRRVLSCKSALQMHYRTHTGERPFK 334
>U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical
protein W05H9.2 protein.
Length = 851
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 64 WRVRNRKKDLDEIDQDLKEENAEKLLNQKVD 156
W +R +KK+L +++++ A +LL K+D
Sbjct: 521 WHLRQQKKELKRLNKEIHFAKAAELLWPKID 551
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,356,251
Number of Sequences: 27780
Number of extensions: 235913
Number of successful extensions: 934
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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