Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k22f
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.56 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 169 GAAQHYCLHCARYFIDEQALNDHFKTKVHKR 261
           G   ++C HC R F+    L  H +    +R
Sbjct: 34  GEKPYHCSHCDRQFVQVANLRRHLRVHTGER 64


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 169 GAAQHYCLHCARYFIDEQALNDHFKT 246
           G   H C  C++ FI    L  H +T
Sbjct: 172 GERPHKCTVCSKTFIQSGQLVIHMRT 197


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/38 (21%), Positives = 17/38 (44%)
 Frame = +1

Query: 22  RKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEK 135
           RK+Y C     +K ++  N  +   E  ++   +  E+
Sbjct: 269 RKRYSCSREREQKSYKNENSYRKYRETSKERSRDRTER 306


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 64  WRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLD 162
           W V   K  + ++  D + ENA K+ + +V  D
Sbjct: 128 WEVNILKSIVGQLQVDTQGENAVKVNSVQVPTD 160


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 481 QNTKPIGNPQKIFSSFHQW 537
           Q T    + ++ F SFHQW
Sbjct: 494 QPTPTTESEERRFFSFHQW 512


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,971
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)