Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k22f
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein ... 62 2e-10
At1g68800.1 68414.m07865 TCP family transcription factor, putati... 33 0.14
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 31 0.43
At5g25870.1 68418.m03069 hypothetical protein 31 0.57
At5g54460.1 68418.m06782 wound-responsive protein-related contai... 31 0.76
At4g27980.1 68417.m04014 expressed protein 30 1.0
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 29 1.8
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 2.3
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ... 29 2.3
At1g54920.2 68414.m06269 expressed protein 29 2.3
At1g54920.1 68414.m06270 expressed protein 29 2.3
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ... 29 3.1
At1g56660.1 68414.m06516 expressed protein 29 3.1
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote... 28 4.1
At1g68360.1 68414.m07808 zinc finger protein-related similar to ... 28 4.1
At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein ... 28 4.1
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 5.4
At3g04200.1 68416.m00444 germin-like protein, putative contains ... 28 5.4
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 28 5.4
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 28 5.4
At2g31840.1 68415.m03888 expressed protein 28 5.4
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta... 28 5.4
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 27 7.1
At4g02405.1 68417.m00325 expressed protein 27 7.1
At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ... 27 7.1
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ... 27 7.1
At5g08630.1 68418.m01026 DDT domain-containing protein low simil... 27 9.4
At4g29630.1 68417.m04222 cytidine deaminase, putative / cytidine... 27 9.4
At4g29620.1 68417.m04221 cytidine deaminase, putative / cytidine... 27 9.4
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ... 27 9.4
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ... 27 9.4
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ... 27 9.4
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 27 9.4
>At2g36930.1 68415.m04529 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type,
domain; weak similarity to Zinc finger protein T86
(Swiss-Prot:O00488) [Homo sapiens]
Length = 198
Score = 62.5 bits (145), Expect = 2e-10
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +1
Query: 148 KVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKALELE-PYTIEESERAAGH 324
++D DLPG Q YCLHC RYF + +DHFKTK HK+R+ + + P++ +++ A G
Sbjct: 47 QLDEDLPGMGQFYCLHCDRYFSNVSVRDDHFKTKKHKKRVNMMMGQAPHSQLDADLAGGM 106
Query: 325 GSFKTATK--RKIVSQNIEKSQTDE 393
G K +V + K +T++
Sbjct: 107 GMPDNGPKLMSNLVFTELRKPETED 131
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 160 DLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKRRLKALEL-EPYTIEESERAAGHG 327
DLPG Q CL C R F + ++ HFKTK HK+R+K +E P++ +++ A G G
Sbjct: 131 DLPGMGQFNCLLCHRNFSNASVMDYHFKTKKHKKRVKKIERPAPHSQLDADLAGGMG 187
>At1g68800.1 68414.m07865 TCP family transcription factor, putative
similar to cyc2 protein [Misopates orontium]; residues
80 to 140 nearly identical to cyc1a protein (nuclear
flower development gene cycloidea) GB:AAF07239
[Antirrhinum siculum]
Length = 317
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 211 IDEQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEKSQTD 390
+DE+ ++ K +V KRR K +E T E ERA +T K K+ + E S+T
Sbjct: 166 VDEKEKDETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAKMKM--RLFETSETI 223
Query: 391 ED 396
D
Sbjct: 224 SD 225
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 178 QHYCLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESE 309
Q YC+ C++ F E+ +H ++K HK ++ L E +T E E
Sbjct: 307 QLYCIVCSKKFKSEKQWKNHEQSKKHKEKVAELR-ESFTDYEEE 349
>At5g25870.1 68418.m03069 hypothetical protein
Length = 173
Score = 31.1 bits (67), Expect = 0.57
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +1
Query: 52 LKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALN 231
L+KR R K++ + ++E + EKL+ + D+ G + + I E+ L
Sbjct: 14 LRKRIETRRENKEMAK----MRETSDEKLIEKDEDVTKAGEFKEMLAIEKTWQIWEELLK 69
Query: 232 DHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEKSQTDEDGDAIL 411
+H + + L LE + Y +EE E + KRK + + S+ E D ++
Sbjct: 70 EHDEFEEISEILVKLEKKYYELEEVENRENLQMKEKTLKRKYKRELKKSSKIKELEDRMI 129
Query: 412 E 414
+
Sbjct: 130 K 130
>At5g54460.1 68418.m06782 wound-responsive protein-related contains
weak similarity to KED [Nicotiana tabacum]
gi|8096269|dbj|BAA95789
Length = 141
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 1 ETDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQK 150
E D+ R+KY G T LKK + RK ++ +KEE AE + +K
Sbjct: 73 ELDLQKGREKYK-GATRLKKEKKKWERKNKRNQSKSPVKEEGAEPVKEEK 121
>At4g27980.1 68417.m04014 expressed protein
Length = 565
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 79 RKKDLDEIDQDLKEENAE-KLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVH 255
R+KDL +++ +KE+ AE K + ++L + A+ R + K K
Sbjct: 179 REKDLRALEEAVKEKTAELKRKEETLELKMKEEAEKL-----REETELMRKGLEIKEKTL 233
Query: 256 KRRLKALELEPYTIEESER 312
++RLK LEL+ +EE+ R
Sbjct: 234 EKRLKELELKQMELEETSR 252
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 82 KKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARY--FIDEQALNDHFKTKVH 255
+ D + D D +EEN E+ + ++D+DL + L C ++ + E + V
Sbjct: 471 ENDCEADDDDKEEENREEDNSSEMDVDL----EKITLDCVQHMSMLGESLSEFEEERLVI 526
Query: 256 KRRLKALELEPYTIEESERAAGHGSFKTA 342
+LK LE T+++ E A G F +
Sbjct: 527 LDQLKVLEDRLVTMQDKESAEDPGEFSNS 555
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 55 KKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALN 231
KK+ V R + E+D DL + ++ K +L A Q LH RYF+ E +
Sbjct: 433 KKKEEVEERT--MQEVDMADLSTHLPKSFISSKDVKNLIAACQ--ALHRVRYFLQENSSR 488
Query: 232 DHFK 243
D FK
Sbjct: 489 DDFK 492
>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 257
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +1
Query: 94 DEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKR 261
DE +++K+++ EK ++ D D + C +C R F QAL H HKR
Sbjct: 68 DESSENIKDKDKEK--DKDKDKDNNNNRRFECHYCFRNFPTSQALGGH--QNAHKR 119
>At1g54920.2 68414.m06269 expressed protein
Length = 890
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 153
K + YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 582 KIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 627
>At1g54920.1 68414.m06270 expressed protein
Length = 430
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQ-DLKEENAEKLLNQKV 153
K + YH HL+K R++ D DE+ + D + E+ + LLN V
Sbjct: 246 KIELYHIALYHLEKLKEARDKAADSDEVQKCDSEIEDLQNLLNNDV 291
>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
(SPL12) identical to squamosa promoter binding
protein-like 12 [Arabidopsis thaliana] GI:6006395;
contains Pfam profiles PF03110: SBP domain, PF00023:
Ankyrin repeat
Length = 927
Score = 28.7 bits (61), Expect = 3.1
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Frame = +1
Query: 67 RVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFI----DEQALND 234
+V N DL ++ + ++ ++ + G Q +C C+R+ + DE +
Sbjct: 128 QVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSC 187
Query: 235 HFKTKVH-KRRLKALELEPYTIEESERAAGH--GSFKTATKRKIVSQNIEKSQTDEDGD 402
+ H KRR KA P TI + ++ T KI+S NI +Q+D+ GD
Sbjct: 188 RRRLAGHNKRRRKA---NPDTIGNGTSMSDDQTSNYMLITLLKILS-NIHSNQSDQTGD 242
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/128 (21%), Positives = 51/128 (39%)
Frame = +1
Query: 19 KRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHC 198
K+K++ D +K++ +N+KK+ DE EE +K +K + D + L
Sbjct: 231 KKKEHDETDQEMKEKDSKKNKKKEKDE---SCAEEKKKKPDKEKKEKDESTEKEDKKLKG 287
Query: 199 ARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEK 378
+ ++ D K K + E++ + E K K ++ + EK
Sbjct: 288 KKGKGEKPEKEDEGK-KTKEHDATEQEMDDEAADHKEGKKKKNKDKAKKKETVIDEVCEK 346
Query: 379 SQTDEDGD 402
D+D D
Sbjct: 347 ETKDKDDD 354
>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
protein
Length = 1143
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 28 KYHCGDTHLKKRWRVRNRK-KDLDEIDQDLKEENAEKLLNQK 150
K GDT+L +++ R+ K ++ ID+DL +E + + LN+K
Sbjct: 1045 KEEFGDTNLVGWSKMKAREGKHMEVIDEDLLKEGSSESLNEK 1086
>At1g68360.1 68414.m07808 zinc finger protein-related similar to
zinc finger protein GI:790683 from [Arabidopsis
thaliana]
Length = 244
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 169 GAAQHYCLHCARYFIDEQALNDHFKT-KVHKRRLKALELEPYTIEESERAAGHGSFKTAT 345
G ++ C +C R F + QAL H K +++LK +L+ T + + GS
Sbjct: 69 GERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQA-TRNAAANFSNAGSASQFL 127
Query: 346 KRKIVS 363
+ IVS
Sbjct: 128 RNPIVS 133
>At1g10480.1 68414.m01180 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 211
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +1
Query: 127 AEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQAL----NDHFKTKVHKRRLK 270
AE + + L +H C +C + F + QAL N H K ++ K+RL+
Sbjct: 42 AESVSSSTNTTSLTVMKRHECQYCGKEFANSQALGGHQNAHKKERLKKKRLQ 93
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 19 KRKKYHCGDTHLKK--RWRVRNRKKDLDEIDQDLKEE 123
+RKK T L + + RVRN KK +DE D D ++
Sbjct: 275 RRKKCSVAKTRLTRGRKRRVRNTKKGVDEDDDDFVDD 311
>At3g04200.1 68416.m00444 germin-like protein, putative contains
Pfam profile: PF01072 germin family; similar to germin
type2 GB:CAA63023 [SP|P92996] [Arabidopsis thaliana]
Length = 227
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 179 NITVYIVQGISLMNKL*MIISR----QKSINGD*KHSSLNLIL*KSQRELLATGVSKQQQ 346
N+T V I +N L + ++R Q N H IL ++ +LL VS Q
Sbjct: 80 NVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQD 139
Query: 347 NEKLFHKILR 376
N +LF+K+L+
Sbjct: 140 NNRLFYKVLK 149
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 88 DLDEIDQDLKEENAEKLLNQKVDLDLPG 171
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 88 DLDEIDQDLKEENAEKLLNQKVDLDLPG 171
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVQMDISG 56
>At2g31840.1 68415.m03888 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 5.4
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Frame = +1
Query: 55 KKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDE--QAL 228
KK WR + D ++ + ++KEE ++ LD P + + R ID+
Sbjct: 73 KKVWRKKEEDSDSEDEEDEVKEET---FGGKEASLDDPVERREW-RKTIREVIDKHPDIE 128
Query: 229 NDHFKTKVHKRR--LKALELEPYTIEES-----ERAAGHGSFKTATKRKIVSQNIEKSQT 387
D V KRR K L P + E E A G G KI +N +K +
Sbjct: 129 EDEEIDMVEKRRKMQKLLADYPLVVNEEDPNWPEDADGWGFSFNQFFNKITIKNEKKEEE 188
Query: 388 DEDGDAILEES 420
D+D D+ ++S
Sbjct: 189 DDDEDSEGDDS 199
>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9UBS4 DnaJ
homolog subfamily B member 11 precursor Homo sapiens;
contains Pfam profile PF00226 DnaJ domain
Length = 300
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 52 LKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGA 174
L++ V N+KK +IDQ L+EE L+ ++DL + GA
Sbjct: 167 LERTGGVSNKKKGSKQIDQKLQEE-----LSNELDLQIKGA 202
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 88 DLDEIDQDLKEENAEKLLNQKVDLDLPG 171
DL+ +Q+LK E + +NQ V +D+ G
Sbjct: 29 DLENTNQELKSELKDLYINQAVHMDISG 56
>At4g02405.1 68417.m00325 expressed protein
Length = 333
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 148 KVDLDLPGAAQHYCLHCARYFIDEQAL 228
K DLD+ QHYCL A FID++ L
Sbjct: 99 KKDLDIHEQQQHYCL--ATKFIDDKLL 123
>At3g09290.1 68416.m01103 zinc finger (C2H2 type) family protein ;
contains Pfam profile: PF00096 Zinc finger, C2H2 type
Length = 172
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 121 ENAEKLLNQKVDLDLPGAAQHYCLHCARYFIDEQALNDHFKTKVHKR 261
++ K +Q VD L + + C C R F + QAL H +H+R
Sbjct: 15 DSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHM--NIHRR 59
>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 324
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +1
Query: 22 RKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDLDLPGAAQHYCLHCA 201
+K C + K+ K+D D+ D+D EE E+ + + H C C
Sbjct: 173 KKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEED-KSTAHIARKRSNAHECTICH 231
Query: 202 RYFIDEQALNDH 237
R F QAL H
Sbjct: 232 RVFSSGQALGGH 243
>At5g08630.1 68418.m01026 DDT domain-containing protein low
similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
finger domain protein 1A (ATP-utilizing chromatin
assembly and remodeling factor 1) (ATP-dependent
chromatin remodelling protein) (Williams syndrome
transcription factor-related chromatin remodeling factor
180) {Homo sapiens}; contains Pfam profile PF02791: DDT
domain
Length = 723
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 217 EQALNDHFKTKVHKRRLKALELEPYTIEESERAAGHGSFKTATKRKIVSQNIEKSQTDED 396
E+ L + + HKR++ ++EP EE E+A K + +K Q ++ + DE
Sbjct: 523 EKRLIGNVYLRKHKRQMTDTKIEPKEEEEDEKAEEDEEEKGFSVKK---QEVKSASEDEK 579
Query: 397 G 399
G
Sbjct: 580 G 580
>At4g29630.1 68417.m04222 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
3 (CDA3) [Arabidopsis thaliana] GI:3818577, cytidine
deaminase homolog DesF [Arabidopsis thaliana]
GI:4836448; similar to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700; contains Pfam profile
PF00383: Cytidine and deoxycytidylate deaminase
zinc-binding
Length = 223
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 151 VDLDLPGAAQHYCLHCARYFIDEQALN 231
V+++LPG H+ +H ++ + ALN
Sbjct: 61 VNVELPGLPLHHSIHAEQFLVTNLALN 87
>At4g29620.1 68417.m04221 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
2 (CDA2) [Arabidopsis thaliana] GI:5080713, cytidine
deaminase homolog DesE [Arabidopsis thaliana]
GI:4836447; similar to cytidine deaminase (CDD)
[Arabidopsis thaliana] GI:3046700; contains Pfam profile
PF00383: Cytidine and deoxycytidylate deaminase
zinc-binding
Length = 337
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 151 VDLDLPGAAQHYCLHCARYFIDEQALN 231
V++D PG H+ +H ++ + ALN
Sbjct: 83 VNVDFPGLPLHHSIHAEQFLVTNLALN 109
>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/107 (27%), Positives = 43/107 (40%)
Frame = -1
Query: 457 IYHCHQFSSFCLDFPLKXXXXXXLFEISQYFVKQXXXXXXX*NSRGQQLSLTLL*YKVQA 278
+Y C Q SF P+ +EI + F+K+ N GQ + K +A
Sbjct: 257 VYVCDQDGSF----PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAA--KNEA 310
Query: 277 RVLLISVYGLLS*NDHSKLVHQ*NTLHNVDSNVVLHLADLNQLFGSV 137
++ Y L+ H K +VD N LHLA +N F S+
Sbjct: 311 S---LTAYMLM----HDKDTKHLGVGQDVDGNTPLHLAVMNWDFDSI 350
>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 604
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/107 (27%), Positives = 43/107 (40%)
Frame = -1
Query: 457 IYHCHQFSSFCLDFPLKXXXXXXLFEISQYFVKQXXXXXXX*NSRGQQLSLTLL*YKVQA 278
+Y C Q SF P+ +EI + F+K+ N GQ + K +A
Sbjct: 257 VYVCDQDGSF----PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAA--KNEA 310
Query: 277 RVLLISVYGLLS*NDHSKLVHQ*NTLHNVDSNVVLHLADLNQLFGSV 137
++ Y L+ H K +VD N LHLA +N F S+
Sbjct: 311 S---LTAYMLM----HDKDTKHLGVGQDVDGNTPLHLAVMNWDFDSI 350
>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 670
Score = 27.1 bits (57), Expect = 9.4
Identities = 29/107 (27%), Positives = 43/107 (40%)
Frame = -1
Query: 457 IYHCHQFSSFCLDFPLKXXXXXXLFEISQYFVKQXXXXXXX*NSRGQQLSLTLL*YKVQA 278
+Y C Q SF P+ +EI + F+K+ N GQ + K +A
Sbjct: 323 VYVCDQDGSF----PIHSAAKNEHYEIIKEFIKRCPASKYLLNRLGQNILHVAA--KNEA 376
Query: 277 RVLLISVYGLLS*NDHSKLVHQ*NTLHNVDSNVVLHLADLNQLFGSV 137
++ Y L+ H K +VD N LHLA +N F S+
Sbjct: 377 S---LTAYMLM----HDKDTKHLGVGQDVDGNTPLHLAVMNWDFDSI 416
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 27.1 bits (57), Expect = 9.4
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +1
Query: 4 TDMTYKRKKYHCGDTHLKKRWRVRNRKKDLDEIDQDLKEENAEKLLNQKVDL--DLPGAA 177
TD+T K + + HL+ + ++ DQ E N ++LL +K +L L +
Sbjct: 946 TDLTEKLEHSNTKLEHLQNDVTELKTRLEVSSSDQQQLETNVKQLLEEKEELAMHLANSL 1005
Query: 178 QHYCLHCARYFIDEQALNDHFKTKVHKRRLKALELEPYTIEESE 309
A + E+AL + + K+ R K +++E + E SE
Sbjct: 1006 LEMEEEKAIWSSKEKALTEAVEEKI--RLYKNIQIESLSKEMSE 1047
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,891
Number of Sequences: 28952
Number of extensions: 207660
Number of successful extensions: 746
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -