Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k21r
         (766 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   3.4  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   3.4  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    24   4.5  
AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    23   7.8  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 640 PKPYARWTRYRRRPSLCAS 696
           P P +RW R+RRR  L  S
Sbjct: 3   PLPQSRWWRWRRRHLLTGS 21


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 392 LLSPKIKHMCNKLIKYWGVIAR*HSCSIKP 481
           LLS  IK   + +I  WG+I+    C  KP
Sbjct: 531 LLSKVIKPRLDCIIGKWGIISTAQKCCNKP 560


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 608 TNVIYKSGRVLRNPMQGGP 664
           T   YK+G++  NP   GP
Sbjct: 53  TTAAYKAGKIAPNPFTAGP 71


>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 706 LSLKTRTGMVVAGSGSTLHRVSEHPSTLVYYICSLLVFTYLQTG 575
           L  K R       +  T+  + EH   L + I +L V TYL  G
Sbjct: 105 LERKLRQAADEGSTNGTVITIGEHTIRLPHNISNLTVNTYLING 148


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,630
Number of Sequences: 2352
Number of extensions: 17997
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79418373
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)