Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k20f
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.8  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 551 TRNTLYFNTIYSNYGNHQKYYS 616
           +  T++ N  Y+NY N + YY+
Sbjct: 308 SNKTIHNNNNYNNYNNKKLYYN 329


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 527 SHIYSYNSTRNTLYFNTIYSNYGNHQKYYSD 619
           S+ Y Y++  N   +N  Y+NY N+   Y++
Sbjct: 319 SNNYKYSNYNN---YNNNYNNYNNYNNNYNN 346


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 521 YKSHIYSYNSTRNTLYFNTIYSNYGNHQK--YYS 616
           + ++ Y YN   N    N   +NY N+ K  YY+
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYN 357


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 337 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 203
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 512 N*KYKSHIYSYNSTRNTLYFNTIYSNYGNHQKYY 613
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 512 N*KYKSHIYSYNSTRNTLYFNTIYSNYGNHQKYY 613
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 533 IYSYNSTRNTLYFNTIYSNYGNH 601
           I + NS  N   +N  Y+NY N+
Sbjct: 82  ISNNNSLSNNYNYNNNYNNYNNN 104


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 518 KYKSHIYSYNSTRNT-LYFNTIYSNYGNHQKYYSDXXL 628
           KY   I+  ++  +T +    +  +YGNH K Y+   L
Sbjct: 321 KYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGL 358


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 518 KYKSHIYSYNSTRNT-LYFNTIYSNYGNHQKYYSDXXL 628
           KY   I+  ++  +T +    +  +YGNH K Y+   L
Sbjct: 321 KYVQMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGL 358


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 539 SYNSTRNTLYFNTIYSNY 592
           S+  T N  YF+  Y NY
Sbjct: 209 SWRITHNFFYFDPRYGNY 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,656
Number of Sequences: 438
Number of extensions: 2326
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)