Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k19r
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 153 8e-38
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 152 1e-37
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 151 2e-37
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 43 9e-05
07_01_0344 - 2490700-2493249 30 0.71
02_02_0097 - 6746934-6747005,6747372-6748325,6748421-6748435,674... 29 1.2
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 27 5.0
03_03_0162 - 14964106-14964644,14964810-14965020 27 6.6
12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143 27 8.7
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 27 8.7
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 153 bits (370), Expect = 8e-38
Identities = 70/112 (62%), Positives = 88/112 (78%)
Frame = -2
Query: 336 AAAVVSGKDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMP 157
A + G + +A ++RIRITL+S NV++LEKVCAD + GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 156 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPG
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPG 120
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 152 bits (368), Expect = 1e-37
Identities = 74/117 (63%), Positives = 91/117 (77%), Gaps = 4/117 (3%)
Frame = -2
Query: 339 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKG 172
MAAA V G + +A ++RIRITL+S NV++LEKVCAD + GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 171 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPG
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPG 117
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 151 bits (366), Expect = 2e-37
Identities = 72/112 (64%), Positives = 89/112 (79%)
Frame = -2
Query: 336 AAAVVSGKDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMP 157
A + SGK + EV HRIRITL+S +V++LEKVC D + GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 156 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPG
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPG 118
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 43.2 bits (97), Expect = 9e-05
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = -2
Query: 288 VSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 109
++P +IRI L S V +E C I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 108 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPG 1
+ F++R H+R+ID+ P ++ + + + + G
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAG 424
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.71
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 272 RWIGETSAWGFSMSLPDTTAAA 337
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>02_02_0097 -
6746934-6747005,6747372-6748325,6748421-6748435,
6748592-6748984
Length = 477
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 362 SAGIQQATWQPL*CQAKTLRNPRQRSPLSTA--SGSLLLXPMCARSRR 225
SA A W + +A+ +R+PR+ +P +TA + + L P A SRR
Sbjct: 313 SAAALHAPWSSVKHRAQIIRSPRRGTPTTTAFRAYNAALAPRAAASRR 360
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 244 CALAREGLC*XNQWSQETEAACKGPS 167
C LA EGL ++W++ A +GPS
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPS 180
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 315 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFER 437
C L+R+ C +K F+Q L E+PH +++F R
Sbjct: 31 CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVR 71
>12_01_0936 - 9285923-9286086,9286343-9286546,9287987-9288143
Length = 174
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 407 LRFSAEQFLIEKLFISAGIQQATWQPL*CQAKTLRNPRQR 288
+R + E I ++SA A + P CQ KTL P++R
Sbjct: 3 IRRAIENANIPHTYVSANCFAAYFSPNLCQMKTLLPPKER 42
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 209 IXSAQTFSSERTLGEVRVILMRWIGETSAWGFSMSLPDTTAAAMLLVE 352
I + T + + +G RV+++R + + A LPD A MLLV+
Sbjct: 332 IKNTTTIDNSKRIGLWRVVVVRNLPYSDARRNGKCLPDLKAIVMLLVK 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,024
Number of Sequences: 37544
Number of extensions: 263319
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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