Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k19r
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   9e-36
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.73 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 29   1.7  
SB_41099| Best HMM Match : VWA (HMM E-Value=0)                         27   5.1  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  146 bits (353), Expect = 9e-36
 Identities = 68/83 (81%), Positives = 76/83 (91%), Gaps = 2/83 (2%)
 Frame = -2

Query: 243 VRSLEKV--CADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHK 70
           VR+  KV  CAD I GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRIHK
Sbjct: 8   VRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHK 67

Query: 69  RVIDLHSPSEIVKQITSINIEPG 1
           R+IDLHSPSEIVKQITSI+IEPG
Sbjct: 68  RLIDLHSPSEIVKQITSISIEPG 90


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
 Frame = -2

Query: 354  NSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSPNVRSLEK--VCADXINGAKKQKLR 181
            ++ S  AAA+ + K  +  +  + PI  +   +T+P    L K  V +  +   ++Q   
Sbjct: 1088 SAKSGSAAAIETPKPTKYQRTALEPIQEVPTPMTTPRNTRLRKDSVMSPTLEAIQEQAPA 1147

Query: 180  VKGPV----RMPTKILRITTRKTPC-GEGSKTWDRFQMRIHKRVIDLHSP 46
            ++  V    ++P K  R   RK P  G   K      + + + VI++ +P
Sbjct: 1148 MENVVEEVEKLPAKKTRGAKRKAPASGNAEKKAKAEPVVVEEEVIEVPAP 1197


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 315 KDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVK 175
           + + K Q E + IH + +T    +VRSLE+ C +  +  +   L+++
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLETTDKYETATLQLE 709


>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3373

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 297  QAEVSPIHRIRITLTSPNVRSLEKVC 220
            +  +S +H   + LT P +++L+KVC
Sbjct: 1992 RGRISCVHVYDVALTGPRIKALKKVC 2017


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 165 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 37
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,380
Number of Sequences: 59808
Number of extensions: 298185
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)