Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k19r
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    24   2.1  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   2.7  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   6.3  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    22   8.3  

>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 1344

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 230 SSERTLGEVRVILMRWIGETSAWGFSMS 313
           S  R LG  RV++ ++ G  SA+G +++
Sbjct: 513 SIARQLGMARVVMHKYAGILSAYGMALA 540


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 305 RNPRQRSPLSTASGSLLLXPMCARSRRSVLT*SMEPRNR 189
           RNPR+RSP S         P   R  RS    S  PR+R
Sbjct: 255 RNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW-PRSR 292


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 60  RSLSCGFSSENDPRSLNLHHKEFYGW 137
           R   C    E + R  N++ +EFY W
Sbjct: 377 RYAECSKRKEQN-RMFNINEREFYNW 401


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 133 GGDTQDLGWHANWALYTQLLFLGSIDXVST 222
           G  T  + W ++W++++     G+I   ST
Sbjct: 194 GNRTLYMSWPSSWSVFSSASQRGAISFAST 223


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,306
Number of Sequences: 2352
Number of extensions: 9619
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)