Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k19r
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   177   2e-44
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   177   2e-44
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   177   2e-44
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   177   2e-44
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   124   1e-28
M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.               29   9.3  
AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen pr...    29   9.3  
AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen pr...    29   9.3  
AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen pr...    29   9.3  
AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1 p...    29   9.3  

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/106 (81%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRI 139
           KD  K   E    IHRIRITLTS NV+SLEKVCAD I GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 138 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPG
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPG 109


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/106 (81%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRI 139
           KD  K   E    IHRIRITLTS NV+SLEKVCAD I GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 138 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPG
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPG 109


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/106 (81%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRI 139
           KD  K   E    IHRIRITLTS NV+SLEKVCAD I GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 138 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPG
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPG 109


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  177 bits (430), Expect = 2e-44
 Identities = 86/106 (81%), Positives = 92/106 (86%), Gaps = 1/106 (0%)
 Frame = -2

Query: 315 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRI 139
           KD  K   E    IHRIRITLTS NV+SLEKVCAD I GAK++ L+VKGPVRMPTK LRI
Sbjct: 4   KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63

Query: 138 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPG
Sbjct: 64  TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPG 109


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  124 bits (299), Expect = 1e-28
 Identities = 56/59 (94%), Positives = 58/59 (98%)
 Frame = -2

Query: 177 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPG
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPG 59


>M16276-1|AAA59823.1|  269|Homo sapiens HLA-DRB2 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 195 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 22
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY663414-1|AAU88032.1|  261|Homo sapiens MHC class II antigen
           protein.
          Length = 261

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 195 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 22
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375869-1|AAQ88043.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 195 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 22
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AY375868-1|AAQ88042.1|  234|Homo sapiens MHC class II antigen
           protein.
          Length = 234

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 195 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 22
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 4   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60


>AF000447-1|AAB86436.1|  255|Homo sapiens MHC class II HLA-DQB1
           protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 195 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 22
           K+ LR+ G +R PT  L +    TP  EG    + F ++  K +    + +E V+ +T
Sbjct: 1   KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,374,374
Number of Sequences: 237096
Number of extensions: 1491040
Number of successful extensions: 3010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3010
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)