Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k19r
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   161   2e-40
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   6.0  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  161 bits (392), Expect = 2e-40
 Identities = 71/92 (77%), Positives = 85/92 (92%)
 Frame = -2

Query: 276 HRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 97
           HRIR+TLTS NV+ LEKVCA  I+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 96  DRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPG
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPG 108


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 234 LEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 112
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 339 MAAAVVSGKDIEKPQAEVSPIH 274
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 339 MAAAVVSGKDIEKPQAEVSPIH 274
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,201,833
Number of Sequences: 27780
Number of extensions: 212632
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)