Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k19r
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 156 5e-39
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 156 5e-39
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 154 2e-38
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 154 2e-38
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 48 4e-06
At1g20530.1 68414.m02558 hypothetical protein 30 0.79
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 28 3.2
At3g06960.2 68416.m00827 expressed protein 28 3.2
At3g06960.1 68416.m00826 expressed protein 28 3.2
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 27 4.2
At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family si... 26 9.7
At5g27220.1 68418.m03247 protein transport protein-related low s... 26 9.7
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 26 9.7
At3g07130.1 68416.m00849 serine/threonine protein phosphatase fa... 26 9.7
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 156 bits (379), Expect = 5e-39
Identities = 68/99 (68%), Positives = 85/99 (85%)
Frame = -2
Query: 297 QAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPC 118
+A + IH+IRITL+S NV++LEKVC D + GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 117 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPG
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPG 112
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 156 bits (379), Expect = 5e-39
Identities = 68/99 (68%), Positives = 85/99 (85%)
Frame = -2
Query: 297 QAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPC 118
+A + IH+IRITL+S NV++LEKVC D + GAK ++LRVKGPVRMPTK+L+ITTRK PC
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPC 73
Query: 117 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
GEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPG
Sbjct: 74 GEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPG 112
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 154 bits (374), Expect = 2e-38
Identities = 67/93 (72%), Positives = 82/93 (88%)
Frame = -2
Query: 279 IHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 100
IH+IRITL+S NV++LEKVC D + GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 99 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
WDRF++R+HKRVIDL S ++VKQITSI IEPG
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPG 114
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 154 bits (374), Expect = 2e-38
Identities = 67/93 (72%), Positives = 82/93 (88%)
Frame = -2
Query: 279 IHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKT 100
IH+IRITL+S NV++LEKVC D + GAK ++LRVKGPVRMPTK+L+ITTRK PCGEG+ T
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNT 81
Query: 99 WDRFQMRIHKRVIDLHSPSEIVKQITSINIEPG 1
WDRF++R+HKRVIDL S ++VKQITSI IEPG
Sbjct: 82 WDRFELRVHKRVIDLFSSPDVVKQITSITIEPG 114
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 47.6 bits (108), Expect = 4e-06
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = -2
Query: 336 AAAVVSGKDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCADXINGAKKQKLRVKGPVRMP 157
A+ V S I +++P +IRI L S V +E C ++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
Query: 156 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQITSINIEPG 1
TK K+P + F++R H+R+ID L+ ++ + + +++ G
Sbjct: 133 TKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAG 184
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 57 GRSLSCGFSSENDPRSLNLHHKEFYGW*YAGSWLACELGPLHAASVSW 200
G +C S + P SLNL+H FY Y + P ++ +W
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFYSRRYESGTITPPPPPPAPSNYAW 153
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 45 RESVGRSLSCGFSSENDPRSLNLH 116
+E +G SLS GFS ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 269 MRWIGETSAWGFSMSLPDT 325
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 269 MRWIGETSAWGFSMSLPDT 325
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 283 PYPPHQDHSYFXQCALAREGLC*XNQWSQETEAACKGPSSHANQDPAYHH 134
P PPHQD ++ R G ++ S + + +G SS + P + H
Sbjct: 348 PQPPHQDRPFYPSMDPQRMGAVSSSKESGSSTSDNRGASSSSYTMPPHGH 397
>At5g47130.1 68418.m05810 Bax inhibitor-1 family / BI-1 family
similar to SP|Q9LD45 Bax inhibitor-1 (BI-1) (AtBI-1)
{Arabidopsis thaliana}
Length = 187
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 187 LLFLGSIDXVSTDLLERAHIGXSKSDPD-AVDRGDLCLGFLNVF 315
LLF+G I + +++E+AH G D D AV L +GF+ VF
Sbjct: 126 LLFVGCIVVNTQEIIEKAHCG----DMDYAVHSLILYIGFVRVF 165
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 229 LERAH--IGXSKSDPDAVDRGDLCL 297
++R H + +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 276 G*GRPLPGVSQCLCLTLQRLPCCLLNSGR--DKQLFNQKLFSAEPEKPHVS 422
G G+ + G++ CL ++ P C + N +A PEKPH+S
Sbjct: 232 GIGKSMSGMAFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKPHIS 282
>At3g07130.1 68416.m00849 serine/threonine protein phosphatase
family protein contains similarity to purple acid
phosphatase [Arabidopsis thaliana]
gi|20257489|gb|AAM15914
Length = 532
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 188 FCFLAPLIXSAQTFSSERTLGEVRVILMRWIGETSAWGFSMSLPDT 325
FCFL+P I SA + S V V + +TS G ++ LPDT
Sbjct: 9 FCFLSPAISSAHSIPSTLDGPFVPVTVPL---DTSLRGQAIDLPDT 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,736,409
Number of Sequences: 28952
Number of extensions: 202725
Number of successful extensions: 477
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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