Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k19f
(507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 1e-41
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 31 0.41
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35) 29 2.2
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 2.9
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 5.1
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_41099| Best HMM Match : VWA (HMM E-Value=0) 27 6.7
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 166 bits (403), Expect = 1e-41
Identities = 79/93 (84%), Positives = 87/93 (93%), Gaps = 2/93 (2%)
Frame = +2
Query: 197 VRSLEKV--CADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHK 370
VR+ KV CADLI GAK++KL+VKGPVRMPTK LRITTRKTPCGEGSKTWDR++MRIHK
Sbjct: 8 VRTTRKVTVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHK 67
Query: 371 RVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
R+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 68 RLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 100
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 196 CALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 309
C A GLC P + ++ + GPSP + DP+ P
Sbjct: 414 CLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 29.9 bits (64), Expect = 1.3
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Frame = +2
Query: 86 NSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSPNVRSLEK--VCADLINGAKKQKLR 259
++ S AAA+ + K + + + PI + +T+P L K V + + ++Q
Sbjct: 1088 SAKSGSAAAIETPKPTKYQRTALEPIQEVPTPMTTPRNTRLRKDSVMSPTLEAIQEQAPA 1147
Query: 260 VKGPV----RMPTKILRITTRKTPC-GEGSKTWDRFQMRIHKRVIDLHSP 394
++ V ++P K R RK P G K + + + VI++ +P
Sbjct: 1148 MENVVEEVEKLPAKKTRGAKRKAPASGNAEKKAKAEPVVVEEEVIEVPAP 1197
>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
Length = 1049
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -3
Query: 490 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHDFRGRV*VDHSLVDSHLK 350
FY L L V D L G+D DLF + R VD+SLV +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 125 KDIEKPQAEVSPIHRIRITLTSPNVRSLEKVCAD 226
+ + K Q E + IH + +T +VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 265 GPSPHANQDPAYHHP 309
GP PH+ Q P HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +1
Query: 160 YPPHQDHSYFTQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 309
Y P +SY CA + +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_41099| Best HMM Match : VWA (HMM E-Value=0)
Length = 3373
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 143 QAEVSPIHRIRITLTSPNVRSLEKVC 220
+ +S +H + LT P +++L+KVC
Sbjct: 1992 RGRISCVHVYDVALTGPRIKALKKVC 2017
>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 497 KNILLAALPTRRRWSPQP 444
+N+++ LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197
>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 275 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 403
R+PT + T +K PC TW R + KR + +H P+ +
Sbjct: 22 RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,673
Number of Sequences: 59808
Number of extensions: 359424
Number of successful extensions: 810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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