Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k19f
(507 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 197 2e-50
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 197 2e-50
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 197 2e-50
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 197 2e-50
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 126 6e-29
CR456452-1|CAG30338.1| 607|Homo sapiens dJ172B20.3 protein. 29 9.3
BC033895-1|AAH33895.1| 607|Homo sapiens ENTH domain containing ... 29 9.3
AK093154-1|BAC04075.1| 388|Homo sapiens protein ( Homo sapiens ... 29 9.3
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 197 bits (480), Expect = 2e-50
Identities = 97/116 (83%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTS NV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 197 bits (480), Expect = 2e-50
Identities = 97/116 (83%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTS NV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 197 bits (480), Expect = 2e-50
Identities = 97/116 (83%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTS NV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 197 bits (480), Expect = 2e-50
Identities = 97/116 (83%), Positives = 103/116 (88%), Gaps = 1/116 (0%)
Frame = +2
Query: 125 KDIEKPQAEVS-PIHRIRITLTSPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 301
KD K E IHRIRITLTS NV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRI
Sbjct: 4 KDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRI 63
Query: 302 TTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 469
TTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 64 TTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 126 bits (303), Expect = 6e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2
Query: 263 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 442
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>CR456452-1|CAG30338.1| 607|Homo sapiens dJ172B20.3 protein.
Length = 607
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 188 SPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQM 358
SP+ + ++V +IN A ++ + ++M KIL+ TTR + EG+ ++ M
Sbjct: 368 SPSFKIFDRVKEIVINKAYQKP--AQSSIQMDDKILKTTTRVSTASEGASSFSPLSM 422
>BC033895-1|AAH33895.1| 607|Homo sapiens ENTH domain containing 1
protein.
Length = 607
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 188 SPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQM 358
SP+ + ++V +IN A ++ + ++M KIL+ TTR + EG+ ++ M
Sbjct: 368 SPSFKIFDRVKEIVINKAYQKP--AQSSIQMDDKILKTTTRVSTASEGASSFSPLSM 422
>AK093154-1|BAC04075.1| 388|Homo sapiens protein ( Homo sapiens
cDNA FLJ35835 fis, clone TESTI2006617. ).
Length = 388
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 188 SPNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQM 358
SP+ + ++V +IN A ++ + ++M KIL+ TTR + EG+ ++ M
Sbjct: 149 SPSFKIFDRVKEIVINKAYQKP--AQSSIQMDDKILKTTTRVSTASEGASSFSPLSM 203
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,903,035
Number of Sequences: 237096
Number of extensions: 1847268
Number of successful extensions: 7255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7255
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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