Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k18r
(351 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic... 65 1e-11
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar... 50 3e-07
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar... 50 3e-07
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar... 50 4e-07
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC... 45 2e-05
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden... 44 4e-05
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC... 41 2e-04
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC... 41 2e-04
At1g51355.1 68414.m05776 expressed protein 36 0.008
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 31 0.16
At4g03170.1 68417.m00433 hypothetical protein 31 0.22
At3g47700.1 68416.m05196 chromosome structural maintenance prote... 30 0.38
At4g00300.1 68417.m00037 fringe-related protein + weak similarit... 29 0.87
At1g33250.1 68414.m04110 fringe-related protein + weak similarit... 29 0.87
At1g78370.1 68414.m09133 glutathione S-transferase, putative sim... 29 1.2
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 29 1.2
At1g20600.1 68414.m02573 DNA-binding protein-related low similar... 29 1.2
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 1.5
At2g24010.1 68415.m02868 serine carboxypeptidase S10 family prot... 28 1.5
At3g26750.1 68416.m03346 expressed protein 27 2.7
At1g53680.1 68414.m06108 glutathione S-transferase, putative sim... 27 2.7
At5g60560.1 68418.m07593 F-box family protein contains Pfam prof... 27 3.5
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 27 3.5
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 27 3.5
At1g60610.2 68414.m06823 expressed protein 27 3.5
At1g60610.1 68414.m06822 expressed protein 27 3.5
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 27 3.5
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot... 27 4.6
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 6.1
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 26 6.1
At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 6.1
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 26 6.1
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 26 8.1
At5g48060.1 68418.m05938 C2 domain-containing protein contains I... 26 8.1
At5g35604.1 68418.m04242 hypothetical protein 26 8.1
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 26 8.1
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 26 8.1
>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
to acyl-CoA-binding protein (ACBP) [Arabidopsis
thaliana] SWISS-PROT:P57752
Length = 92
Score = 65.3 bits (152), Expect = 1e-11
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = -1
Query: 291 MSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAW 118
M L E+F++ A+KV PS+++ L LY LYKQA G V+ ++P + E AKW AW
Sbjct: 1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAW 60
Query: 117 NGRKGISQDDAKKQYIENAEKL 52
+G S ++A YI ++L
Sbjct: 61 KAVEGKSSEEAMNDYITKVKQL 82
>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 669
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -1
Query: 249 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQ 76
+N +K DD L LY+LY+QAT+G N +PS VE +KWK+W G + +A +
Sbjct: 33 KNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRL 92
Query: 75 YIENAEK 55
+++ E+
Sbjct: 93 FVKILEE 99
>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
discoideum); contains Pfam profiles PF00887: Acyl CoA
binding protein, PF01344: Kelch motif
Length = 668
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -1
Query: 249 RNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQ 76
+N +K DD L LY+LY+QAT+G N +PS VE +KWK+W G + +A +
Sbjct: 33 KNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMRL 92
Query: 75 YIENAEK 55
+++ E+
Sbjct: 93 FVKILEE 99
>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
RING finger rngB protein, cytosolic - Dictyostelium
discoideum, PIR:S68824; contains Pfam profiles PF01344:
Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
Length = 648
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = -1
Query: 252 VRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKK 79
V+ +K S+D +L LY+L++QAT+G +I +PS VE +KWK+W G + +A +
Sbjct: 33 VKQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMR 92
Query: 78 QYIENAEK 55
+++ E+
Sbjct: 93 LFVKILEE 100
>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
putative similar to acyl-CoA binding protein 2
[Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 338
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = -1
Query: 234 KPSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENA 61
K S++ L LY LYK AT G QPS L AKW+AW + ++A ++YI+
Sbjct: 116 KVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLV 175
Query: 60 EKLH 49
+L+
Sbjct: 176 TQLY 179
>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
identical to acyl-CoA binding protein 2 [Arabidopsis
thaliana] gi|12039034|gb|AAG46057
Length = 354
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 231 PSDDENLALYSLYKQATIGDVNIAQPSGL--VESAKWKAWNGRKGISQDDAKKQYIENAE 58
PSD + LY LYK AT G QPS L AKW+AW + ++A ++YIE
Sbjct: 128 PSDVQQ-QLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIEIVT 186
Query: 57 KLH 49
+L+
Sbjct: 187 QLY 189
>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 362
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 222 DENLALYSLYKQATIGDVNIAQPSGLVESA--KWKAWNGRKGISQDDAKKQYIENAEK 55
+ + L+ L+K AT G AQP ++ SA KW AW +SQ++A +QY+ K
Sbjct: 254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSK 311
>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
putative contains similarity to acyl-CoA binding protein
2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
Length = 364
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -1
Query: 222 DENLALYSLYKQATIGDVNIAQPSGLVESA--KWKAWNGRKGISQDDAKKQYIENAEK 55
+ + L+ L+K AT G AQP ++ SA KW AW +SQ++A +QY+ K
Sbjct: 254 EAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSK 311
>At1g51355.1 68414.m05776 expressed protein
Length = 116
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 299 NTKCLSTSNSNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSP 153
N+ STS+++ SP T PSPV+ + CTP SR+P ++ P+P
Sbjct: 32 NSDVTSTSSTSTSPT--STATPSPVSAESGCCTPEKSRIPEMLTCPPAP 78
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -3
Query: 145 CGERQVEGMERSQRHLPRRCQEAIHRKCGETPLQIR 38
CG + + ++ S+ + +CQ HR+C E+PL+I+
Sbjct: 156 CGACKGKMLDTSKDYACLQCQRKFHRECVESPLEIK 191
>At4g03170.1 68417.m00433 hypothetical protein
Length = 250
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 174 DVNIAQPSGLVESAKWKAWNGRKGISQDDAKKQYIEN 64
DV++ P G V+ ++K WNG K KQ++E+
Sbjct: 178 DVSVYGPDGKVQQMEFKMWNGDKTPVLTSGWKQFVED 214
>At3g47700.1 68416.m05196 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 795
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -1
Query: 294 KMSLDEQ---FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAK 130
++ LDE+ FK+ D RNW K DE ++ ++Y+ I + + S ++E +K
Sbjct: 456 EIELDERLVKFKEEIDNDRNWTAK-VQDELISSSNVYRPPIISSIFLQHLSSIIERSK 512
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 785
Score = 29.1 bits (62), Expect = 0.87
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +2
Query: 44 LEWSFSAFSMYCFL-ASSWEMPLRPFHAFHL-------ALSTRPLGWAMLTSPMVACLYR 199
+ W ++ ++ A E+P R F+ +HL A +TRP+ W P V
Sbjct: 356 ISWGYTVQITRTYMPARMMEVPTRTFNDWHLRSDFTNLAFNTRPVTWTDCQRPRVFYFSH 415
Query: 200 EYSARFSSSLGLVFQFL 250
+S SS + Q+L
Sbjct: 416 AFSNSSSSDTTTISQYL 432
>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 548
Score = 29.1 bits (62), Expect = 0.87
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 81 SWHRLGRCLCDRSMPSTWRSPQDRWAGQC 167
+WH R LC R+ P+T P GQC
Sbjct: 508 NWHLAPRRLCCRATPTTTNEPLRLTVGQC 536
>At1g78370.1 68414.m09133 glutathione S-transferase, putative
similar to 2,4-D inducible glutathione S-transferase
GI:2920666 from [Glycine max]
Length = 217
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 135 AKWKAWNGRKGISQDDAKKQYIENAEKLHSK 43
A++K W G+KG Q+ KK++IE + L S+
Sbjct: 109 AQFKVW-GKKGEEQEAGKKEFIEAVKILESE 138
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 169 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 255
N+TYG+ GV +KV+++ G P PNL
Sbjct: 31 NVTYGTASPLGVPQKVILING-QFPGPNL 58
>At1g20600.1 68414.m02573 DNA-binding protein-related low similarity
to RAV2 [Arabidopsis thaliana] GI:3868859
Length = 237
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 174 DVNIAQPSGLVESAKWKAWNGRK 106
DV++ P G V+ K+K WNG K
Sbjct: 167 DVSVYGPDGEVQQMKFKMWNGDK 189
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 29 IIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWAMLTSP 178
I+ Y E +Y FL W RP H H + T+ + WA SP
Sbjct: 505 ILICYPELILPTTFLYMFLIGLWNFRFRPRHPAH--MDTK-VSWAEAASP 551
>At2g24010.1 68415.m02868 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
Length = 425
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 297 HKMSLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQ-ATIGDVNIAQPSGLVESAKWKA 121
H M D+ +K + K SD N ALY Y++ + +I PS + ++ + K
Sbjct: 203 HAMISDKTYKSILKHCSFTADKTSDKCNWALYFAYREFGKVNGYSIYSPSCVHQTNQTKF 262
Query: 120 WNGR 109
+GR
Sbjct: 263 LHGR 266
>At3g26750.1 68416.m03346 expressed protein
Length = 526
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 63 HFRCIASWHRLGRC-LCDRS-MPS-TWRSPQDRWAGQC 167
HF C + +RL + L D S MPS WR D W G C
Sbjct: 156 HFYCRSCSNRLTKKELLDFSEMPSINWRESADNWFGTC 193
>At1g53680.1 68414.m06108 glutathione S-transferase, putative
similar to GI:2853219 from [Carica papaya]
Length = 224
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -1
Query: 126 KAWNGRKGISQDDAKKQYIENAEKLHSK 43
K W +KG Q+ KK+++E+ + L ++
Sbjct: 116 KIWGNKKGEEQEKGKKEFLESLKVLEAE 143
>At5g60560.1 68418.m07593 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 374
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 2 VGNLFNSKVIIYAYLEWSFSAFSMYCFLASSWEM 103
+G N K I + + SFS + +Y F+++SW +
Sbjct: 146 IGYNNNRKHKILRFSDMSFSTYKIYDFISNSWRV 179
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 279 EQFKQVADKVRNWKTKPSDDENLALYSLYKQATI-GDVNIAQPSGLVE 139
E+F+ + + VR W TKP ++A + LYK I I Q G+ E
Sbjct: 729 EEFRLLFEYVREWNTKPKLC-HIAQFVLYKTFNILPPTEIVQVKGIGE 775
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 169 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 255
N+TYG+ G+ ++V+++ G P PNL
Sbjct: 32 NVTYGTAAPLGIPQQVILING-QFPGPNL 59
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -1
Query: 285 LDEQFKQVADKVRNWKTKPSDDE---NLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 115
L ++ KQVA + +NW K +E N +L + + G+ N A G+ + + K
Sbjct: 207 LVDKIKQVAVEAQNWHYKAKYNESVVNALKVNLQQVMSHGNDNNAVGGGVADHHQMKEGF 266
Query: 114 GRKGISQDDAKKQYI 70
G I + A Y+
Sbjct: 267 GDSEIDDEAASYNYL 281
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -1
Query: 285 LDEQFKQVADKVRNWKTKPSDDE---NLALYSLYKQATIGDVNIAQPSGLVESAKWKAWN 115
L ++ KQVA + +NW K +E N +L + + G+ N A G+ + + K
Sbjct: 207 LVDKIKQVAVEAQNWHYKAKYNESVVNALKVNLQQVMSHGNDNNAVGGGVADHHQMKEGF 266
Query: 114 GRKGISQDDAKKQYI 70
G I + A Y+
Sbjct: 267 GDSEIDDEAASYNYL 281
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 228 SDDENLALYSLYKQATIGDV--NIAQPSGLV-ESAK-WKAWNGRKGISQDDAKKQYIENA 61
S DE+ + L KQA+IG + + G+ E A+ W + +K + D + +Q +E A
Sbjct: 155 SRDESTTIIRLSKQASIGQLYEMVCAGKGVAKEKARIWDYFEKKKSVLLDPSSEQSVEEA 214
>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 554
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 169 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 255
N+TYG++ GV ++V+++ G P PN+
Sbjct: 33 NVTYGTVSPLGVPQQVILING-QFPGPNV 60
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -1
Query: 240 KTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 121
K KP + L YS++ TI ++ + + KW A
Sbjct: 238 KVKPRKGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWVA 277
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 136 RQVEGMERSQRHLPRRCQEAIHRKC 62
R VE E ++ + RCQ A+H++C
Sbjct: 497 RWVEDWEENKMIICNRCQVAVHQEC 521
>At2g23096.1 68415.m02755 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam profile: PF03171
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 274
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 258 DKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 121
+K K KP + + Y+L+ TI ++ +++ KW A
Sbjct: 219 EKCVGLKVKPRQGDAIFFYNLFPNGTIDQTSLHGSCPVIKGEKWVA 264
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 169 NITYGSLLVQGVQRKVLIVTGLGLPVPNL 255
N+TYG+ GV ++V+++ G P PN+
Sbjct: 34 NVTYGTASPLGVPQQVILING-QFPGPNI 61
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 91 RCQEAIHRKCGETPLQIR 38
+CQ H++C E+PL+I+
Sbjct: 153 QCQGKFHKECVESPLEIK 170
>At5g48060.1 68418.m05938 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1036
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +2
Query: 29 IIYAYLEWSFSAFSMYCFLASSWEMPLRPFHAFHLALSTRPLGWAMLTSP 178
I+ Y E +Y F W RP H H+ + L WA P
Sbjct: 872 ILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMK---LSWAEAVGP 918
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = -2
Query: 266 RSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKTM 87
RSP R G SP + T C+ RL T+ P + +PS + + K T+
Sbjct: 69 RSPRRPSRGNSSPRRDKARARTDCSPRLSPPSRTMGPPPPVATSPSSQ-WSGEKTDHNTV 127
Query: 86 PRSNTSKMRRNSTPNTHKLL 27
P+ + R TP K++
Sbjct: 128 PQKEGGEHR--DTPPRSKVV 145
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/18 (38%), Positives = 15/18 (83%)
Frame = -3
Query: 91 RCQEAIHRKCGETPLQIR 38
+C++ H++C E+PL+I+
Sbjct: 149 QCEKKFHKECVESPLEIK 166
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 25.8 bits (54), Expect = 8.1
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +1
Query: 28 NNLCVFGVEFLRIFDVLLLGIVLGDAFATVPCLPLGALHKTAGLGNVNITYGSLLVQGVQ 207
+N C+ V+ +FDVL++ + GD + + +G L T + N+ G L + V
Sbjct: 245 DNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLVGGLGLTPSM-NIG-EDGIALAEAVH 302
Query: 208 RKVLIVTGLGLPVPNLIGDLFELLVERHFVLS 303
+ G+ L P + L +++ RH L+
Sbjct: 303 GSAPDIAGMNLANPTAL-LLSGVMMLRHLKLN 333
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,788,525
Number of Sequences: 28952
Number of extensions: 193147
Number of successful extensions: 689
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -