Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k15r
(413 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos... 56 2e-09
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 29 0.29
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 25 3.5
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 3.5
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 3.5
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 25 4.7
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 25 4.7
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 6.1
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 6.1
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 24 8.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 24 8.1
>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 56.0 bits (129), Expect = 2e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = -2
Query: 280 SLK*LMHTFXYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENK 101
SLK + ++ + +QFGY LVGT+PFNSFLSGFIS V FV+ V R+ + +
Sbjct: 25 SLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVGQFVITVGFRMAL---TQ 81
Query: 100 NEFQGLSAER 71
E Q S+++
Sbjct: 82 QELQSSSSKK 91
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 29.1 bits (62), Expect = 0.29
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 338 SLTAVIPK--LYQEYTTKTPKKLKIIDA---YLXVYFPYC 234
+LT PK LY Y++++PK KI+D L + F YC
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILDCPDEILQLIFSYC 184
>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 88
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 349 SQCLHLLL*FQNCIKNTQRK 290
+QC +L+ +NC+K T RK
Sbjct: 51 AQCANLVAALENCMKTTHRK 70
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 197 FPI*FFLKWFYIYSKLL 147
FP FFL WFY++ +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 3.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 359 INKITMSSLTAVIPKLYQE 303
INK+ S++ +IP+L+QE
Sbjct: 131 INKVNKSNIRDIIPELFQE 149
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.0 bits (52), Expect = 4.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 133 CLRLQVNPENKNEFQGLSAERGXADF 56
C++ QV+P+ NEF +A++ F
Sbjct: 356 CVKFQVDPDKPNEFLAGTADKRILQF 381
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 386 LTCIIYYCKINKITMSSLTAVIPK-LYQEYTTKTPKKLK-IIDAYLXVYFPYCGHTIRLL 213
L C++ +I ++ AV P L+QE+ K I + + V YCGH I L
Sbjct: 237 LVCLVENTRI--ALDKAIAAVKPGVLFQEFGNIIEKHTNSITEKQISVVRTYCGHGINQL 294
Query: 212 LPC 204
C
Sbjct: 295 FHC 297
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 365 CKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLXVYF 243
CK+ K S+ P++ T K P + ++ID L +YF
Sbjct: 49 CKVAKTLAGSVPK--PRIASLRTIKHPVRSEVIDKALMLYF 87
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 247 IFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVCL 128
+F+ ++ +G C + T PF F T S F+LG C+
Sbjct: 451 VFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 95 VPRAECRTWLXRFHICTSGVAYCCY 21
VP R W+ RFH +G+ Y
Sbjct: 546 VPVEPLRWWVFRFHSLNAGIIQAAY 570
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 24.2 bits (50), Expect = 8.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 68 LXRFHICTSGVAYCCYQCH 12
L + +C CCYQCH
Sbjct: 348 LTKGSLCDDQQDACCYQCH 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,713
Number of Sequences: 5004
Number of extensions: 31028
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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