Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k15r
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088...    74   5e-14
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298...    31   0.48 
02_04_0573 + 23985468-23987054                                         29   1.9  
06_03_0570 - 22363197-22363588,22363755-22366782                       28   2.6  
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284...    27   4.5  
06_03_0602 - 22666227-22668740                                         27   7.8  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    27   7.8  
03_02_0664 - 10262690-10263273,10263594-10263726,10263826-102640...    27   7.8  

>04_03_0783 +
           19607871-19607951,19608027-19608074,19608719-19608806,
           19608887-19608930,19609016-19609099
          Length = 114

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = -2

Query: 238 TAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKNEFQGLSAERGXAD 59
           TA+IQ  Y  +VG+FPFNSFLSG +S +   VL VCLR+QVN +NK EF+ L  ER  AD
Sbjct: 39  TALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNK-EFKDLPPERAFAD 97

Query: 58  FI 53
           F+
Sbjct: 98  FV 99


>08_01_1077 -
           11027732-11027839,11028346-11028477,11029722-11029802,
           11029911-11030063,11030167-11030281,11030282-11030927,
           11031409-11031613,11031696-11031758
          Length = 500

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 105 FSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQQ*PNCMTAVRKIYXKVCINYFKLL 284
           FS L C  RH+P  K+LT+ ++  +++ NG+   R       +A  +   K+CI+  + L
Sbjct: 373 FSRLFCLLRHSPELKELTLKLEVERQDHNGEDEIRLMVGRSFSA--ENLKKICISTMQEL 430

Query: 285 RSFRCVFLIQFWNYSSK 335
              R +   Q W   S+
Sbjct: 431 S--RKIARRQSWGMLSR 445


>02_04_0573 + 23985468-23987054
          Length = 528

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 69  PRSALSPWNSFL----FSGLTCSRRHTPRTKQLTV 161
           P  A+S WN+ +    ++G++CSRRH  R   L +
Sbjct: 46  PTQAMSSWNASVPFCQWTGVSCSRRHPGRVTALNL 80


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 45  CANMKSAKPRSALSPWNSFL----FSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVP 203
           C   + +    +L+ WN  L    + G+TC +RH  R   L ++      +LNG +P
Sbjct: 47  CLKSRLSNNARSLASWNESLQFCTWPGITCGKRHESRVTALHLE----SLDLNGHLP 99


>01_01_0362 -
           2843659-2844468,2844669-2844699,2844824-2844903,
           2846680-2847831
          Length = 690

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 176 KWFYIYSKLLCSWSVPS 126
           ++FY YS   CSWS P+
Sbjct: 215 EYFYSYSAATCSWSAPT 231


>06_03_0602 - 22666227-22668740
          Length = 837

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 111 GLTCSRRHTPRTKQLTVDIKPLKKELNGKVP 203
           G+TCS+ HT R  +L ++       L+G++P
Sbjct: 77  GVTCSKSHTSRVTELNLE----SSNLHGQIP 103


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 147 KQLTVDIKPLKKELNGKVPTRQQ*PNCMTAVRKI 248
           K  TV I+ +KKEL G++  +   PNC     KI
Sbjct: 384 KNPTVLIEEVKKELEGELSRQHPCPNCRQPNPKI 417


>03_02_0664 -
           10262690-10263273,10263594-10263726,10263826-10264016,
           10264094-10264219,10264537-10264616,10265312-10265375,
           10265470-10265554
          Length = 420

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 95  VPRAECRTWLXRFHICTSGVAYCCYQCHRIK 3
           V  AE   W+ R  I + G+AYC    H++K
Sbjct: 227 VREAEKLDWMTRLRI-SMGIAYCLEHMHQLK 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,193
Number of Sequences: 37544
Number of extensions: 173881
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)