Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k15r
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)                   27   6.1  

>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 196 NHNMVTRAHNHNMVTRIHNHN 216



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 52  NHNMVTRINNHNMVTRIHNHN 72



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 133 NHNMVTRIHNHNMVTRIHNHN 153



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 160 NHNMVTRTHNHNMVTRIHNHN 180



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 169 NHNMVTRIHNHNMVTRIHNHN 189



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 178 NHNMVTRIHNHNMVTRIHNHN 198



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 NHNVFTYCCNSKIVSRIHNEN 289
           NHN+ T   N  +V+RIHN N
Sbjct: 277 NHNMVTRAHNHIMVTRIHNHN 297


>SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 72  RSALSPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKE 185
           R+ L+ W   LF  L CSR      K++  + KP+ K+
Sbjct: 3   RAVLACWPLVLFLALFCSRARAENDKRIYTNKKPVYKK 40


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 18   LITTICNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQLTVD 164
            L+ TIC+   A +K  K   +  P     ++  TC+R +    KQ+T+D
Sbjct: 1136 LMCTICSKTFATLKFLKKHVSRKPHEDKPYNSTTCNRAY---RKQITLD 1181


>SB_14259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/54 (20%), Positives = 30/54 (55%)
 Frame = -1

Query: 359 INKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLXVYFPYCGHTIRLLLPCRH 198
           I   T ++++A +P++     T T +  KI+  ++ ++    G+ + +++ CR+
Sbjct: 3   ITNYTFANVSAGVPRIPPLDMTSTERIAKIVVCFVIIFTALVGNALIIVVVCRN 56


>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
          Length = 2182

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 224  IRLLLPCRHFPI*FFLKWFYIYSKLLCSWSVPSATS 117
            I + +P R+ P+  F    Y++ K+  +WS    T+
Sbjct: 1838 INMKIPLRNMPVNDFTPMCYVWDKVSSTWSFTDVTT 1873


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,868,073
Number of Sequences: 59808
Number of extensions: 233866
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)