Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k15f
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35520.1 68415.m04350 defender against cell death 2 (DAD2) id...   109   9e-25
At1g32210.1 68414.m03962 defender against cell death 1 (DAD1) id...   105   1e-23
At2g35520.2 68415.m04351 defender against cell death 2 (DAD2) id...   105   2e-23
At5g57130.1 68418.m07135 expressed protein                             31   0.51 
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    28   2.7  
At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putati...    27   6.2  
At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati...    27   6.2  
At1g19620.1 68414.m02445 expressed protein                             27   6.2  

>At2g35520.1 68415.m04350 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 115

 Score =  109 bits (262), Expect = 9e-25
 Identities = 56/107 (52%), Positives = 69/107 (64%)
 Frame = +1

Query: 61  KITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLS 240
           K T      +   L+  YT  TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLS
Sbjct: 3   KSTSKDAQDLFHSLHSAYTA-TPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLS 61

Query: 241 GFISTVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 381
           G +S +   VL VCLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 62  GVLSCIGTAVLAVCLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 107


>At1g32210.1 68414.m03962 defender against cell death 1 (DAD1)
           identical to defender against cell death 1 (DAD-1,
           AtDAD1) [Arabidopsis thaliana] SWISS-PROT:Q39080
          Length = 115

 Score =  105 bits (252), Expect = 1e-23
 Identities = 51/86 (59%), Positives = 62/86 (72%)
 Frame = +1

Query: 124 TPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNP 303
           TP  LKIID Y+ +   TA+IQ  Y  LVG+FPFNSFLSG +S +   VL VCLR+QVN 
Sbjct: 23  TPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNK 82

Query: 304 ENKNEFQGLSAERGFADFIFAHLVLH 381
           ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 83  ENK-EFKDLAPERAFADFVLCNLVLH 107


>At2g35520.2 68415.m04351 defender against cell death 2 (DAD2)
           identical to defender against cell death 2 (DAD-2,
           AtDAD2) [Arabidopsis thaliana] SWISS-PROT:O22622
          Length = 116

 Score =  105 bits (251), Expect = 2e-23
 Identities = 56/108 (51%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = +1

Query: 61  KITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQ-FGYCCLVGTFPFNSFL 237
           K T      +   L+  YT  TP  LKIID Y+ +   TA+IQ   Y  LVG+FPFNSFL
Sbjct: 3   KSTSKDAQDLFHSLHSAYTA-TPTNLKIIDLYVCFAVFTALIQQVAYMALVGSFPFNSFL 61

Query: 238 SGFISTVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 381
           SG +S +   VL VCLR+QVN ENK EF+ L+ ER FADF+  +LVLH
Sbjct: 62  SGVLSCIGTAVLAVCLRIQVNKENK-EFKDLAPERAFADFVLCNLVLH 108


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 356 KSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKV 213
           K  KP S LS  N F      CSR+ +  +  L ++IK   +E+ G++
Sbjct: 731 KKRKPESDLSIENGFWMKKEVCSRQSSFNSSYLDLNIKAEDEEVEGEI 778


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
            domain-containing protein contains Pfam profiles PF02170:
            PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 414  YILSYEIDNNNMQHQMCKYEIC-KATFCTQPLELI 313
            Y+LS EI  N+ Q Q   +++C   T CT+P+ L+
Sbjct: 1093 YVLSDEIGFNSNQIQKLIFDLCFTFTRCTKPVALV 1127


>At5g47200.1 68418.m05820 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:303750 from [Pisum
           sativum]
          Length = 202

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 154 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 258
           YLF + L      G  CL+  F  +S+L  +IST+
Sbjct: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41


>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
           very strong similarity to RAB1C [Lotus corniculatus var.
           japonicus] GI:1370166; contains Pfam profile PF00071:
           Ras family
          Length = 202

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 154 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 258
           YLF + L      G  CL+  F  +S+L  +IST+
Sbjct: 7   YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41


>At1g19620.1 68414.m02445 expressed protein
          Length = 317

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 160 FYIFLTAVIQFGYCCL 207
           + + L+AV+ FGYCCL
Sbjct: 21  YTVGLSAVVAFGYCCL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,862
Number of Sequences: 28952
Number of extensions: 178403
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)