Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k12f
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   1.9  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    29   2.5  
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    29   2.5  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    28   4.3  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   5.7  
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    27   7.5  

>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 157 IGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 324
           +GE +  +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 218 VGEKI-LSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 516 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 394
           CS   +D+    EG+    L N+ L+ +S+GS+   D A N
Sbjct: 142 CSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 456 SNDVLKGKS-SGSERPQDAAENADFSFSGTD*C*NSGNSQD*VESGADVADTTQMQGAE 283
           + D  K +S SG    Q   E   FSFS  D C   GNS      G+  +DT ++ G E
Sbjct: 374 AGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS----SVGSSSSDTVKVDGKE 428


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 516  CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 397
            CSS  ++  VV EG+G   ++ ++ + KS+  E   D+ E
Sbjct: 990  CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 253 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 345
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 91  DVDFEPNSQRILDIVISNLFNEIGEL 168
           D D+E + QR +D+++    N +G+L
Sbjct: 249 DKDYEDSKQREIDVLVKKTMNVLGDL 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,345
Number of Sequences: 28952
Number of extensions: 181716
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)