Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k10r
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0464 - 17463066-17465136,17470821-17471650                       28   4.8  
06_03_1153 - 28047125-28047751                                         27   8.5  

>08_02_0464 - 17463066-17465136,17470821-17471650
          Length = 966

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 193  FSGSIRNTSGNVDVHDXLHKRRGTGGNSRSNDNR 294
            + G + N  GNVD  D  H     GG ++  DN+
Sbjct: 922  YFGEVMN-DGNVDEEDSAHLTDNNGGKNQDEDNK 954


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 172 NNGVGLDFSGSIRNTSGNVDVHDXLHKRRGTGGN 273
           N G GLD S SI    G++  +D L+   G GGN
Sbjct: 163 NGGGGLDGSSSIGTNGGDIGGNDDLY---GGGGN 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,916,652
Number of Sequences: 37544
Number of extensions: 83578
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)