Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k10f
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   4.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   4.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.1  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 360 NGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHY 181
           NG L   F D+        G    ++G    HDE+     T GN  +N+  S  + ++++
Sbjct: 84  NGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN--NNNTPSATNNNTNF 141

Query: 180 TTVSD 166
              S+
Sbjct: 142 NNNSN 146


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 357  GALFSLF----GDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRS 205
            GAL S+F    G+N G  L  SG  + +S  +    +L  +  T  N+R++   S
Sbjct: 960  GALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAALQKLCDKTETHTNNRTHSATS 1014



 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 246 RGTGGNSRSNDNRSGLHGSSHYTTV 172
           +G GG S S +N+     SSH + V
Sbjct: 523 KGGGGGSGSGNNQPPGGPSSHVSAV 547


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 360 NGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHY 181
           NG L   F D+        G    ++G    HDE+     T GN  +N+  S  + ++++
Sbjct: 32  NGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN--NNNTPSATNNNTNF 89

Query: 180 TTVSD 166
              S+
Sbjct: 90  NNNSN 94


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -3

Query: 360 NGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHY 181
           NG L   F D+        G    ++G    HDE+     T GN  +N+  S  + ++++
Sbjct: 215 NGKLSDKFLDDEMSKKSCQGCEMPSAGLCGSHDEIPDISSTRGN--NNNTPSATNNNTNF 272

Query: 180 TTVSD 166
              S+
Sbjct: 273 NNNSN 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,554
Number of Sequences: 336
Number of extensions: 776
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)