Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k10f
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical pr... 32 0.23
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 30 0.69
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 28 3.7
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 4.9
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 4.9
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 4.9
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 27 4.9
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 4.9
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 32.3 bits (70), Expect = 0.17
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -3
Query: 360 NGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 184
N + +L +NG + SGS+RN N + + K RG GN++ N + H +H
Sbjct: 535 NSSTSALTPRSNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593
>Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical
protein C26D10.1 protein.
Length = 569
Score = 31.9 bits (69), Expect = 0.23
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = -3
Query: 303 GSIRNTSGNVDVHDELHK 250
G++RN++GNVDVH LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 30.3 bits (65), Expect = 0.69
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -3
Query: 363 DNGALFSLFGDNNGVGLDFSGSIR--NTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 190
D GA S +N GL G+ + N DV LH G S ND +GL+
Sbjct: 878 DQGAKISTSSTDNQGGLACYGTTQAANWINLPDVRSALHVSSAAGAWSACNDTINGLYVQ 937
Query: 189 SHYTTVS 169
H T S
Sbjct: 938 QHNDTTS 944
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = -3
Query: 369 DRDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 190
DRD F DN G G F G G D ++ G GG+ +R G G
Sbjct: 247 DRDRRESSGGFRDNRGGGGGFGG------GGRDRFNDRSGGGGYGGDRDRGGDRGGDRGG 300
Query: 189 SHYTT 175
S Y+T
Sbjct: 301 SRYST 305
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
LH+ G G S S++N + H + HY +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
LH+ G G S S++N + H + HY +S
Sbjct: 456 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 485
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
LH+ G G S S++N + H + HY +S
Sbjct: 428 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 457
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 369 DRDNGALFSLFGDNN-GVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHG 193
+ +N + S +G NN G G S S SGN + ++ + G G ++ +N N S +G
Sbjct: 211 NNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNGNGSNGNG 270
Query: 192 SSH 184
+ +
Sbjct: 271 NGN 273
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 258 LHKRRGTGGNSRSNDNRSGLHGSSHYTTVS 169
LH+ G G S S++N + H + HY +S
Sbjct: 360 LHQGYGMNGPSCSSENNNPFHQNHHYNDIS 389
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,618,034
Number of Sequences: 27780
Number of extensions: 77685
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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