Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k09r
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 168 8e-43
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 29 0.69
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.8
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 27 3.7
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 27 3.7
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 3.7
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 27 3.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.4
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 25 8.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 8.5
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 168 bits (408), Expect = 8e-43
Identities = 91/203 (44%), Positives = 118/203 (58%), Gaps = 2/203 (0%)
Frame = -2
Query: 722 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDL 543
++ Q +Q V AL+C+P +L+ KP L N E+ S+N +DL
Sbjct: 614 LYPGQKYLQVGLVIAALICVPWLLIVKPFVLWRRHSNE---ENKYQSLN--------SDL 662
Query: 542 GDVQPKPEAKSSGGHDHEDEPFS--EIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHA 369
+V + + + EPF E++IHQ IHTIE+ L +SHTASYLRLWALSLAH
Sbjct: 663 PNVDEADALMAVDSQEKQAEPFELGEVVIHQVIHTIEFCLGCVSHTASYLRLWALSLAHN 722
Query: 368 ELSEVLWNMVLTFGLKDHNYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVE 189
+LS VLWNM L G + VG+I + + F FW + T +LV MEG SA LH+LRLHWVE
Sbjct: 723 QLSSVLWNMTLANGFRMTGIVGSIFVVILFGFWFIATCVVLVAMEGTSAMLHSLRLHWVE 782
Query: 188 FMSKFYAGLGYIFQPFCFKTILE 120
MSK + G GY F PF FK E
Sbjct: 783 GMSKHFEGEGYAFTPFTFKVTAE 805
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 511 DLASGLGCTSPRSVCSCSSMPWLTLPLECSGLGLFFLVASRYSGFPSS 654
D+ G G SP+ V S+P L L +E GL F FP++
Sbjct: 374 DITRGRGSDSPKEVMKDLSLPVLVLGIESDGLFTFDEQVEIAKSFPNA 421
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 323 KDH-NYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFMSKFYAGLGYIFQ 147
K+H ++VGA+ V W F L +L + ++ +LRL E S + L +
Sbjct: 110 KEHAHFVGALDERVITSNWGQFPLLLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLL 169
Query: 146 PFC 138
P C
Sbjct: 170 PEC 172
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 288 VQLDGAHVVMVLQAERQHHVP*YFGQLSVGERQGPESEVGGCVRDGAEYVFDGV 449
+ A +V+ E + P Y + G + G V G +RDG +DG+
Sbjct: 104 IMTGNAEIVVAGGTESMSNAPYYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGL 157
>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 204 TQSMQECGESLHHDEDGEREQRPETERHVQL 296
TQ+ Q CG++ +ED + + R ++H QL
Sbjct: 86 TQARQLCGDAHKFNEDAKTDLRNSIKQHQQL 116
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +3
Query: 156 VAQTGVEFAHEFNPVQTQSMQECGESLHHDEDGEREQRPETERHVQLDGAH 308
V ++G F + ++ ++++E E+L+H E E++ E H + G++
Sbjct: 65 VGRSGSAFYNAILGLEPKAIEEATEALYHAEQVTEERKKHFEHHDRPIGSY 115
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 44 LNYVSIFFIMLHNICNIFNHLYFPLV 121
L Y+ F+ HN +IF Y PLV
Sbjct: 327 LGYMQGVFVAYHNTSDIFGFQYIPLV 352
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 41 ILNYVSIFFIMLHNICNIFNH-LYF 112
IL ++S F ++LH C+I++H L+F
Sbjct: 38 ILCFLSFFALLLHLPCSIYSHTLHF 62
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 624 GEQVQR--LPEQHDGDAEQRDEHEHALDVALSVEHELLA 734
G+Q+++ LP Q +++Q +H+ ++V S++ ++ A
Sbjct: 784 GQQLRQESLPSQQSSESKQSTQHQQPVEVQKSIQSDVSA 822
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 366 LSVGERQGPESEVGGCVRDGAEYVFDGV 449
+SV E++G GGC D E VF+G+
Sbjct: 382 MSVDEKRGIVYVSGGCKWDPDELVFEGL 409
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.5
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Frame = -3
Query: 613 TTPSPNIPTAASTKASSCRSRPTSATCSP-SPKLXXXXXXXXXXXXXXXXXXXXXXXXXX 437
T+PS + PT+ S A+S PTS + SP SP
Sbjct: 1595 TSPSYS-PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Query: 436 TYSAPSLTQPPTSDSGPCRSPTLS--CPKYYGT 344
+YS S + PTS S SP+ S P Y T
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Frame = -2
Query: 476 SEIMIHQAIHTIEYVLSTISHTASYLRLW---ALSLAHAELSEVLW----NMVLTFGLKD 318
S + + + + +IE +HT + LR W +L L AEL +L+ + L +D
Sbjct: 39 SGVSVEEKLKSIEETPDAYTHTYTILRDWVDSSLELYKAELHRILFPIFVHSYLNLLSQD 98
Query: 317 HNYVGAIKLYVAF 279
H Y A + Y F
Sbjct: 99 H-YEAAKQFYELF 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,318
Number of Sequences: 5004
Number of extensions: 50450
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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