Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k09r
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.9  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.1  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 221 FLHTLRLHWVEFMSKFYAGLGYI-----FQPFCFKTILE 120
           F++ +R+   +FM + Y  LGY+     F PF  + + +
Sbjct: 217 FMNVMRMKLKQFMPRLYDLLGYVMPDRTFAPFFTRVVTD 255


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 553 CSC-SSMPWLTLPLECSGLGL 612
           C C +   W T  ++CSGLG+
Sbjct: 765 CKCYNDRTWNTNAVDCSGLGV 785


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 600 GLGVVLLSGEQVQRLPEQHDGDAEQRDEHE 689
           G+G +  +GE V  + E  D D +  D+ +
Sbjct: 375 GVGAMNANGEAVGEVDEDDDDDGDDDDDDD 404


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 155  CSPDRRRICS*IQPSANAEYARMRRVPP 238
            C+PD++     ++ S   +Y + R+ PP
Sbjct: 971  CNPDQKPTEYLLEDSMKQQYGKRRKEPP 998


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 181 LMNSTQCKRRVCKNAESPSIMTRMASVNSAQKQNA 285
           LM +T+C R   +NA + +   + A   +A  QNA
Sbjct: 413 LMRNTRCGRYHNQNAGNQNADNQNADNQNANNQNA 447


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 607 GLFFLVASRYSGFPSSM 657
           G+ F+   RY G PSS+
Sbjct: 78  GMTFVTVPRYKGVPSSL 94


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 616 FLVASRYSGFPSSMTGMQSSAMN 684
           FL   RY+G PSS+  +     N
Sbjct: 82  FLAVIRYNGVPSSLNVVSDKTGN 104


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 350 IVLRTTQRGRATRPRVGGRRLCERWC*VRIRWC 448
           ++L +T  G   R R+G   L ER       WC
Sbjct: 5   LLLLSTSHGWQIRDRIGDNELEERIIYPGTLWC 37


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 350 IVLRTTQRGRATRPRVGGRRLCERWC*VRIRWC 448
           ++L +T  G   R R+G   L ER       WC
Sbjct: 10  LLLLSTSHGWQIRDRIGDNELEERIIYPGTLWC 42


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 314 NYVGAIKLYVAFCFWALF 261
           +YV AI +Y+  CF  +F
Sbjct: 299 SYVKAIDIYLVMCFVFVF 316


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 350 IVLRTTQRGRATRPRVGGRRLCERWC*VRIRWC 448
           ++L +T  G   R R+G   L ER       WC
Sbjct: 10  LLLLSTSHGWQIRDRIGDNELEERIIYPGTLWC 42


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 418 EMVLSTYSMVWMAWWIMIS 474
           E  L+  S VW AW ++++
Sbjct: 605 EDALNLSSAVWFAWGVLLN 623


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 665  IPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQ 552
            +   L GKP+ L +  KN      ++GSV  G +   Q
Sbjct: 1196 VTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQ 1233


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 632  LLATKKNNPKPEHSNGSVNQ 573
            + ATK+ N K    NG +NQ
Sbjct: 1016 ITATKQLNNKARIGNGPINQ 1035


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,375
Number of Sequences: 438
Number of extensions: 3836
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)