Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k09r
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 161 4e-40
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 161 6e-40
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila... 156 1e-38
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil... 30 1.4
At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containi... 30 1.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 3.2
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 28 5.6
At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT pro... 28 5.6
At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT pro... 28 5.6
At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT pro... 28 5.6
At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT pro... 28 5.6
At4g15950.1 68417.m02421 expressed protein 28 5.6
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 7.4
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 28 7.4
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 28 7.4
At1g49990.1 68414.m05610 expressed protein ; expression supporte... 28 7.4
At4g25150.1 68417.m03620 acid phosphatase, putative similar to a... 27 9.8
At1g07840.2 68414.m00851 leucine zipper factor-related similar t... 27 9.8
At1g07840.1 68414.m00850 leucine zipper factor-related similar t... 27 9.8
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar to
Swiss-Prot:Q93050 vacuolar proton translocating ATPase
116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 161 bits (391), Expect = 4e-40
Identities = 91/204 (44%), Positives = 116/204 (56%)
Frame = -2
Query: 722 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDL 543
+F Q +Q V +F+AL+ +P MLL KP L K +H Q ++TD
Sbjct: 632 LFPHQKTLQLVLLFLALVSVPCMLLPKPFIL--------KKQHEARHQGQAYAPLDETD- 682
Query: 542 GDVQPKPEAKSSGGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAEL 363
E G H HE+ FSEI +HQ IHTIE+VL +S+TASYLRLWALSLAH+EL
Sbjct: 683 --ESLHVETNGGGSHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSEL 740
Query: 362 SEVLWNMVLTFGLKDHNYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFM 183
S V + VL L Y + L V + T+ +L++ME LSAFLH LRLHWVEF
Sbjct: 741 SSVFYEKVL---LLAWGYNNPLILIVGVLVFIFATVGVLLVMETLSAFLHALRLHWVEFQ 797
Query: 182 SKFYAGLGYIFQPFCFKTILEQEE 111
+KFY G GY F PF F ++E
Sbjct: 798 NKFYEGDGYKFAPFTFIFTANEDE 821
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar to
vacuolar proton ATPase 100-kDa subunit from Dictyostelium
discoideum P|1384136|gb|AAB49621
Length = 821
Score = 161 bits (390), Expect = 6e-40
Identities = 93/204 (45%), Positives = 123/204 (60%)
Frame = -2
Query: 722 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDL 543
+F Q +Q F+F+AL+ +P MLL KP L K +H + +QG+ Q D
Sbjct: 633 LFPNQKIVQLTFLFLALVSVPWMLLPKPFIL--------KKQHE--ARHQGLSYA-QLDE 681
Query: 542 GDVQPKPEAKSSGGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAEL 363
D + E + GGH HE+ FSEI +HQ IHTIE+VL +S+TASYLRLWALSLAH+EL
Sbjct: 682 TDESLQVET-NGGGHGHEEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSEL 740
Query: 362 SEVLWNMVLTFGLKDHNYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFM 183
S V + VL +N I + F F T+ +L++ME LSAFLH LRLHWVE+
Sbjct: 741 SSVFYEKVLLMAWGFNNVFIWIVGILVFIF---ATVGVLLVMETLSAFLHALRLHWVEYQ 797
Query: 182 SKFYAGLGYIFQPFCFKTILEQEE 111
+KFY G GY F PF F + ++E
Sbjct: 798 NKFYEGDGYKFAPFTFTLVGNEDE 821
>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar to
Swiss-Prot:Q93050 vacuolar proton translocating ATPase
116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 817
Score = 156 bits (379), Expect = 1e-38
Identities = 92/199 (46%), Positives = 122/199 (61%)
Frame = -2
Query: 722 MFDAQSDIQRVFVFIALLCIPVMLLGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDL 543
+F Q +Q V + +A + +P ML KP A +K + E G G+ + + DL
Sbjct: 631 LFWGQRPLQIVLLLLAFIAVPWMLFPKPF---ALRKIHM--ERFQGRT-YGVLVSSEVDL 684
Query: 542 GDVQPKPEAKSSGGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHAEL 363
DV+P ++ GGH E+ FSEI +HQ IH+IE+VL ++S+TASYLRLWALSLAH+EL
Sbjct: 685 -DVEP--DSARGGGHHEEEFNFSEIFVHQLIHSIEFVLGSVSNTASYLRLWALSLAHSEL 741
Query: 362 SEVLWNMVLTFGLKDHNYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRLHWVEFM 183
S V + VL N + I+L + +A T IL+MME LSAFLH LRLHWVEFM
Sbjct: 742 STVFYEKVLLLAWGYENIL--IRL-IGVAVFAFATAFILLMMETLSAFLHALRLHWVEFM 798
Query: 182 SKFYAGLGYIFQPFCFKTI 126
KF+ G GY F+PF F I
Sbjct: 799 GKFFNGDGYKFKPFSFALI 817
>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
protein contains Pfam profile: PF04981 NMD3 family
Length = 516
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 499 CPPLDLASGLGCTSPRSVCSCSSMPWLTLPLECSGLGLFFLVASRY--SGFPSSMTGMQ 669
C P +ASGLG P VC+ S +TL L+ L FL A +Y SGF S++T Q
Sbjct: 260 CLPSKVASGLGNLGPLVVCTKVS-DNITL-LDPRTLRCAFLDARQYWRSGFRSALTSRQ 316
>At1g22830.1 68414.m02850 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat. Gene
continues on the 3' end of BAC F19G10 gb|AF000657 gene
F19G10.21
Length = 703
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 380 LAHAELSEVLWNMVLTFGLKDHNYVGAIKLYVAFCFWALFTLAILVMMEGLSAFLHTLRL 201
L+ E S V WN + L+ NY+GA+ V + + + M+ GL A H L
Sbjct: 278 LSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNV-RIGSVAMINGLKACSHIGAL 336
Query: 200 HW 195
W
Sbjct: 337 KW 338
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 628 SPLRRTTPSPNIPTAASTKASSCRSRPTSATCSPSP 521
SP+++ P P P+ TK +S +S P + P P
Sbjct: 617 SPIKKRRPQPPSPSTEETKTTSPQSPPVHSPPPPPP 652
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 614 NNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDE 483
N+ K + V + + E D D + + K SGGHD +D+
Sbjct: 68 NDKKEKKKEHDVQKKDKQHENKDKDDEKKHVDKKKSGGHDKDDD 111
>At4g35450.4 68417.m05039 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 304
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 650 LGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPFSE 471
+G P+ L + + +PE + + + + LGDV+ A +SGG+ E++
Sbjct: 155 MGMPVAGLPDQTVSAEPEVAEEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGR 214
Query: 470 IMIHQA 453
+H A
Sbjct: 215 TALHFA 220
>At4g35450.3 68417.m05038 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 650 LGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPFSE 471
+G P+ L + + +PE + + + + LGDV+ A +SGG+ E++
Sbjct: 193 MGMPVAGLPDQTVSAEPEVAEEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGR 252
Query: 470 IMIHQA 453
+H A
Sbjct: 253 TALHFA 258
>At4g35450.2 68417.m05037 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 650 LGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPFSE 471
+G P+ L + + +PE + + + + LGDV+ A +SGG+ E++
Sbjct: 193 MGMPVAGLPDQTVSAEPEVAEEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGR 252
Query: 470 IMIHQA 453
+H A
Sbjct: 253 TALHFA 258
>At4g35450.1 68417.m05036 ankyrin repeat family protein / AFT
protein (AFT) contains ankyrin repeats, Pfam:PF00023;
identical to cDNA AFT protein (AFT) GI:3478699
Length = 342
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 650 LGKPLYLLATKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDEPFSE 471
+G P+ L + + +PE + + + + LGDV+ A +SGG+ E++
Sbjct: 193 MGMPVAGLPDQTVSAEPEVAEEGEEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGR 252
Query: 470 IMIHQA 453
+H A
Sbjct: 253 TALHFA 258
>At4g15950.1 68417.m02421 expressed protein
Length = 160
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 266 LFTLAILVMME-GLSAFLHTLRLHWVEFMS 180
+FT L + E LS L LRLHW+ F+S
Sbjct: 88 VFTTQTLNLSEKSLSILLAVLRLHWIRFVS 117
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 430 SAPSLTQPPTSDSGPCRSPTLSCP 359
SAPS +QPP S P + P S P
Sbjct: 164 SAPSKSQPPRSSVSPAQPPKSSSP 187
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -2
Query: 611 NPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAK---SSGGHDHEDEPFSEIMIHQ 456
NP+ H+ G + + Q+Q G VQP + GGH+H P S +HQ
Sbjct: 359 NPQQYHAAGGSHH--QQQQQPQGGWVQPGGQGSMGMGGGGHNHYMAPPSSSSMHQ 411
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
Pfam profile PF00018: SH3 domain
Length = 1196
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 634 TCSPLRRTTPSPNIPTAASTKASSCRSRPTSATCSPSPKL 515
T L P+P + S+ ASS S+PTSA+ S S L
Sbjct: 8 TLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHL 47
>At1g49990.1 68414.m05610 expressed protein ; expression supported
by MPSS
Length = 371
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = -2
Query: 548 DLGDVQPKPEAKSSGGHDHEDEPFSEIMIHQAIHTIEYVLSTISHTASYLRLWALSLAHA 369
D V P P A H+H+DE + + + T + I L+ W L +
Sbjct: 207 DQCQVIPLPGANDEHEHEHDDE---HEHVRRCLTTSGEDVIFIEVIHRILKAWRLHNKES 263
Query: 368 ELSEVLWNMVLTFGLKDHN 312
E +++W +V+ + D N
Sbjct: 264 ERWQLIWEVVMPSFISDVN 282
>At4g25150.1 68417.m03620 acid phosphatase, putative similar to acid
phosphatase-1(1); Apase-1(1) [Lycopersicon esculentum]
GI:7705154, acid phosphatase [Glycine max] GI:3341443;
contains Pfam profile PF03767: HAD superfamily
(subfamily IIIB) phosphatase
Length = 260
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 526 LGCTSPRSVCSCSSM-PWLTLPLECSGLGLFFLVASRY 636
L CTS R +++ PW T+P EC+ +L+ Y
Sbjct: 46 LHCTSWRFAAETNNLAPWKTIPAECADYVKDYLMGEGY 83
>At1g07840.2 68414.m00851 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 623 TKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDE 483
T P E ++ E Q+ DL + +PKP+ + D ED+
Sbjct: 120 TTAGGPVTELAHSEGKGSCEAQKSEDLSNYKPKPDLLADKEDDQEDD 166
>At1g07840.1 68414.m00850 leucine zipper factor-related similar to
charged amino acid rich leucine zipper factor-1
(GI:12061569) {Mus musculus}
Length = 312
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 623 TKKNNPKPEHSNGSVNQGIELQEQTDLGDVQPKPEAKSSGGHDHEDE 483
T P E ++ E Q+ DL + +PKP+ + D ED+
Sbjct: 120 TTAGGPVTELAHSEGKGSCEAQKSEDLSNYKPKPDLLADKEDDQEDD 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,989,753
Number of Sequences: 28952
Number of extensions: 284843
Number of successful extensions: 1256
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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