Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k09f
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.65 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   2.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.6  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   6.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 574 PVSSDIKDLVKESMPISSCAVKKASVF 494
           P SSD+  L+KE+MP+    V+   V+
Sbjct: 441 PNSSDLNMLIKETMPLPRKLVRGQDVW 467


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 568 SSDIKDLVKESMPISSCAVKKA 503
           + +IKDL+++  PI++C + +A
Sbjct: 34  TEEIKDLLQKYPPIANCKLVQA 55


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 510 RKLRSFQGHVSIRSTPDSFVS---N*PRCVTAREFR 412
           RK  S   H S + T DSF+S   +  +C + RE +
Sbjct: 385 RKSTSSSTHTSSQQTSDSFLSKRNSEKKCGSLREIK 420


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 38  IEDLAHLCFTLNGVLEIIQ 94
           ++D   LC   NG+LE+I+
Sbjct: 356 MDDFLGLCGPKNGLLEVIK 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,887
Number of Sequences: 336
Number of extensions: 3222
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)