Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k09f
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0) 94 7e-20
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 36 0.019
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.077
SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3) 34 0.10
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 34 0.10
SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5) 34 0.10
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 34 0.10
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.10
SB_9562| Best HMM Match : TetR_C (HMM E-Value=4) 34 0.10
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 33 0.18
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 33 0.18
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 32 0.31
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 32 0.41
SB_56000| Best HMM Match : HSA (HMM E-Value=2.8) 31 0.95
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 30 1.7
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3) 29 2.2
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 29 2.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_34626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017) 28 5.1
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 28 6.7
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2) 28 6.7
SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3) 28 6.7
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 28 6.7
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2) 27 8.8
SB_50076| Best HMM Match : Filament (HMM E-Value=0.15) 27 8.8
>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
Length = 1128
Score = 94.3 bits (224), Expect = 7e-20
Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +3
Query: 114 SEEMALCQLFIQPEAAYTSVSELGE-AGSVQFRD-LNPDVNAFQRKFVNEVRRCDEMERK 287
++E+ + +F++ ++ Y S GE GS R LNPDVNAFQRKFVNEVRRC+EMERK
Sbjct: 72 AKELLIGCMFLR-DSVYFSAEFYGEFEGSYVIRQSLNPDVNAFQRKFVNEVRRCEEMERK 130
Query: 288 LRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILE 425
LR+++ E+ K + + E+ AP+PRE+IDLEA + +I E
Sbjct: 131 LRFLQKEIEKAEIAMVDTGESSEAPHPREMIDLEAEQHVHQQQIQE 176
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 237 QRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
Q K + +C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 277 QEKMXAQREKCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 332
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA---VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H PA V+ AP+P+++ L A L
Sbjct: 62 KCEFMQPSLKYLGHVIDKDGIH-PASDKVEAIKTAPSPQDVTQLRAFL 108
>SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3)
Length = 327
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 50 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 96
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 463 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 509
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 608 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 654
>SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)
Length = 296
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 29 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 75
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 642 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 688
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 685 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 731
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 415 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 461
>SB_9562| Best HMM Match : TetR_C (HMM E-Value=4)
Length = 242
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 80 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 126
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 497 KCEFMQPPLKYLGHIIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 543
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA---VKEAPRAPNPREIIDLEAHL 398
+C+ M+ L+Y+ + KDG+H PA ++ AP+P+++ L A L
Sbjct: 326 KCEFMQPSLKYLGHVIDKDGIH-PASDKLETIKTAPSPQDVTQLRAFL 372
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 320 WRPHSRRQGSPPSSKPEGNH*LGGTFRENRKRNSRAVTQR 439
W+P SRR+ P S++P + GT R +R R R + R
Sbjct: 593 WKPFSRRKARPSSARPRS---IFGTSRTSRHRRRRRIVAR 629
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHLEKTENE 416
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L + +E
Sbjct: 536 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 588
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 264 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHLEKTENE 416
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L + +E
Sbjct: 319 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 371
>SB_56000| Best HMM Match : HSA (HMM E-Value=2.8)
Length = 410
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 418 ISFSVFSKCASKSMISLGFGARGASLTAGMWTPSLCTSASMY 293
+ F+ FS+ I+ AR ++AG+WT C SA+ +
Sbjct: 346 LEFAQFSRKRVIEFIAFALWARDCCISAGLWTRDRCISAACF 387
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 30.7 bits (66), Expect = 0.95
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Frame = +3
Query: 231 AFQRKFVNEVRRCDEMERKLRYIE---AEVHKDGVHI-PAVKEAPRAPNPREIIDLE-AH 395
A +++ +R+ +++R+L+ +E AEV KDGV I A++ + + + + +E
Sbjct: 720 AMKQRESKRLRQAQQIQRELQELEVKQAEVEKDGVVIEKAIRSGELSKSEEQKMMMEWFK 779
Query: 396 LEKTENEILELSHNAVNLKQNYLEL--------TELRHVLEKTEAFFTAQEEIGMDSLTK 551
+ +N ++ V + NY++L E+R +L K + T Q++I + TK
Sbjct: 780 IINRKNAMIRYESELV-IHANYIQLEDQQGRLEQEIRELLMKEAS--TEQDQIEIQLKTK 836
Query: 552 SLISDETGQQ 581
L+ D GQ+
Sbjct: 837 ELV-DIVGQR 845
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 234 FQRKFVNEVR-RCDEMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE 410
+ R + E R ++ +R+ R VH+D + + ++KE P P+ II + + E
Sbjct: 76 YTRLVIQESRDEYEKQQRQSRENLKRVHEDTLTVQSLKETPAIEPPKNIISQKLNQETNG 135
Query: 411 NEILELS 431
++ E++
Sbjct: 136 GQLREIT 142
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 29.9 bits (64), Expect = 1.7
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +3
Query: 171 VSELG-EAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKL--RYIEAEVHKDGVHIPAV 341
++E+G E G+V+ R L +V + + + + R KL +Y E E KD + ++
Sbjct: 85 MAEIGVEKGNVE-RSLE-EVQSQNKDLMQQAERAKAELAKLSAKYEELEDEKDEMQ-ESL 141
Query: 342 KEAPRAPNPREIIDLEAHLEKTENEILELSHNAVNLKQNYLELTELR-HVLEKTEAFFTA 518
+ R + REI DLEA LE +E + +L + N + L ++L+ +++ E A
Sbjct: 142 SDTIREKS-REIRDLEADLEMSEQKYEDLKSSWNNTE---LVTSDLQGELMQAREEVIRA 197
Query: 519 QEEI 530
Q E+
Sbjct: 198 QSEV 201
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 1.7
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +3
Query: 222 DVNAFQRKFVNEVRRCDEMERKLR---YIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEA 392
D+ A Q + + E++R E R ++ E E D +H + + RE+ DL+
Sbjct: 1215 DIRAQQLEEIEELKRQIEHMRDVQNNYQKELEAKDDSLHY---LQDSKKEMMRELEDLKE 1271
Query: 393 HLEKTENEILELSHN-AVNLKQNYLELTELRHVLEKTE 503
L K ENE+ E + V NY + EL K E
Sbjct: 1272 MLHKKENELAEQAERIRVFESNNYGDAKELYETCNKLE 1309
>SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)
Length = 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +3
Query: 273 EMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE----NEILEL-SHN 437
E+ +E H++ V + +E RE+++L H E E E++EL H
Sbjct: 14 ELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHR 73
Query: 438 AVNLKQNYLELTELRHVLEKTEAFFTAQEEIGMDSLT 548
+ + +EL E R ++E E F + + ++S T
Sbjct: 74 ELVEHRELVELVEHRELVEHRELGFLSILDARVNSNT 110
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +3
Query: 294 YIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE----NEILEL-SHNAVNLKQN 458
++E H++ V + +E RE+++L H E E E++EL H +
Sbjct: 12 HLELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVE 71
Query: 459 YLELTELRHVLEKTE-AFFTAQEEIGMDSLTKSLISDET 572
+ EL E R ++E E E+G S+ + ++ T
Sbjct: 72 HRELVEHRELVELVEHRELVEHRELGFLSILDARVNSNT 110
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 271 MKWNANSGTSRLRCTKMASTFPPSRKPPELQTRG 372
MKW N TS + ++AS+ P S + P T+G
Sbjct: 1022 MKWETNLKTSMIAYAELASSVPDSVEAPTDNTQG 1055
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +3
Query: 180 LGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDE--MERKLRYIEAEVHKDGVHIPAVKEAP 353
L +A +VQ +L D+ Q++ E+R+ +E +RKL +E +V +
Sbjct: 3032 LRQADNVQL-NLRKDLEDLQKE-KEELRKENENLKKRKLSIVE-KVKVTSSECAVASQVS 3088
Query: 354 RAPN-PREIIDLEAHLEKTENEILELSHNAVNLKQNYLE 467
+ P+ E + + +E +NEI+ L + A NL++ L+
Sbjct: 3089 QVPDLGSEPVAKASSMESAQNEIIMLENQAKNLRKQILK 3127
>SB_34626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 582 LVDQSRQILKTWSKNPCRFPPVR*RKLRSFQGHVSI 475
L +++ + K W + P RFP R + R F GH S+
Sbjct: 16 LREKTEKPQKGWIRKPFRFPNFRAKTERKFTGHDSL 51
>SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)
Length = 401
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 14 NSTTV*VLIEDLAHLCFTLNGVLEIIQDGGYVPERGDGF--VPTLHSARGGLYLRLRAW* 187
+ T V ++ + H+C + ++ D GY+PER F V + +S L LR+ +
Sbjct: 15 HGTPVCTVVHAIRHVCISTG---RLLSDFGYIPERSSLFFIVLSTNSMSTRLKLRIESGP 71
Query: 188 S---WQRAVQRFKSGRKCFP 238
S W R V R R P
Sbjct: 72 SAVVWGRPVARLIIDRILIP 91
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 189 AGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAV 341
+GS FR D ++RK++ C +RYIEA + G +P V
Sbjct: 348 SGSFYFR--TTDTAPYRRKYLTLDTDCFSRFTSIRYIEAAPYPGGPQLPKV 396
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 301 RLRCTKMASTFPPSRKPPELQTRGKSLTW 387
RL+ +T PP PP+ Q G+ L W
Sbjct: 99 RLQTPTRTTTLPPIHSPPQDQHPGRQLPW 127
>SB_37309| Best HMM Match : Toxin_29 (HMM E-Value=1.2)
Length = 754
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/58 (37%), Positives = 28/58 (48%)
Frame = +1
Query: 286 NSGTSRLRCTKMASTFPPSRKPPELQTRGKSLTWRHI*RKPKTKFSSCHTTRSI*NKT 459
NS R T S P + PP LQ +GKSLT + KP K HT+R + K+
Sbjct: 12 NSNHLEWRDTNPKSPASP-QSPPSLQVQGKSLTLNRV--KPIIKE---HTSRELSKKS 63
>SB_35722| Best HMM Match : CutA1 (HMM E-Value=8.3)
Length = 171
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 301 RLRCTKMASTFPPSRKPPELQTRGKSLTW 387
RL+ ST PP PP+ Q G+ L W
Sbjct: 140 RLQTPTKRSTLPPIHSPPQDQHPGRLLPW 168
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 301 RLRCTKMASTFPPSRKPPELQTRGKSLTW 387
RL+ +T PP PP+ Q G+ L W
Sbjct: 139 RLQTPTKTTTLPPIHSPPQDQHPGRQLPW 167
>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 216
Score = 27.5 bits (58), Expect = 8.8
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 228 NAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKT 407
NA RK +++ +R E+ ++L I+A H KE ++ + + +D EK
Sbjct: 28 NAKLRKQLDDTKR--ELAQQLNQIQALKQSQNTH----KEPSQSESTTQQLDQS---EKF 78
Query: 408 ENEILELSHNAVNLKQNYLELTELRHVLEKTE 503
N++ E+ + LKQ LEL + + + E
Sbjct: 79 GNQVEEIHNLTKQLKQAKLELDQANKIKDDYE 110
>SB_50076| Best HMM Match : Filament (HMM E-Value=0.15)
Length = 380
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 276 MERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILELSH 434
++RKL E K I ++++ RA ++I DLEA L N+I++L +
Sbjct: 276 LKRKLNNSEDAYQKAQDKISNMQQSERAYK-QKIADLEAELAAARNQIIQLEN 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,665
Number of Sequences: 59808
Number of extensions: 436588
Number of successful extensions: 1230
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -