Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k04r
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   3.8  
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.7  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   6.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.7  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    25   8.9  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 336  QPSQWKQQLCWYLGLGCRLRQNFRC 262
            QP QW Q+LC    L CR   ++ C
Sbjct: 1785 QPFQWFQELCVKAFLACRPYAHYIC 1809


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 494 TLAFGTANXFSGGTRVTTSSVHMHGSYNMNN 402
           T +FG A      T  +TSS    GS N NN
Sbjct: 67  TFSFGKAATTGNSTNASTSSPFSFGSTNTNN 97


>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 434 VHMHGSYNMNNLHNDVAVINHNHVGFNNNIQRINLAS 324
           V  H   +MNNLH  +  ++H      N+   I+  S
Sbjct: 135 VGFHAGPSMNNLHLHIMTLDHVSPSLKNSAHYISFTS 171


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 497 FTLAFGTANXFSGGTRVTTSSVHMHGSYNMNNLHNDVA 384
           FTL  GT+  FS   RV  S++          +HND+A
Sbjct: 411 FTLRSGTSYQFSNINRVEQSALVAFLESKQIKIHNDLA 448


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 286  PASAELPMLXREPTTNKNAKSAF--RSLLTPSAPGLLETL*SLAPPSVLTALTVAAPAGE 113
            P   +LPM    P+     +S F   S   P+A     ++ +L PP    ++T +APA  
Sbjct: 866  PMLGQLPMRRAAPSMAP-VRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIA 924

Query: 112  TP 107
            +P
Sbjct: 925  SP 926


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 233 VFVGCWLPXQHRKFC 277
           VF+  W P Q RKFC
Sbjct: 939 VFLRAWYPVQVRKFC 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,804
Number of Sequences: 5004
Number of extensions: 33247
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)