Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k04r
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0304 + 17112677-17113195 31 0.98
01_07_0385 - 43212580-43213142,43213234-43213612 30 1.3
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 3.0
12_02_0305 - 17235832-17236379,17237345-17237444 29 4.0
07_03_0951 - 22836167-22836358,22836455-22837213 29 4.0
11_07_0002 - 27171791-27172222 28 5.2
09_02_0279 + 6702517-6702948 28 5.2
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 28 5.2
06_01_0376 + 2709254-2711267,2711311-2711450 28 6.9
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 28 6.9
07_03_1616 - 28167872-28168303 27 9.2
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 27 9.2
02_02_0549 + 11410129-11412180 27 9.2
>12_02_0304 + 17112677-17113195
Length = 172
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 520 PGMPRLVSSPSLLAQLTXSPEAPGSPPPV 434
P PR SPS+ A+ T +P SPPPV
Sbjct: 39 PPSPRRAPSPSVTAEPTPAPVIAPSPPPV 67
>01_07_0385 - 43212580-43213142,43213234-43213612
Length = 313
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 438 GGGDPGASGEXVSCAKSEGELTSLGIPGPP--AVSSGHRA 551
GGGD GAS VS A + +G+ PP V +G RA
Sbjct: 182 GGGDGGASSVVVSAAAAAARRLPVGVRKPPLHVVVTGERA 221
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 520 PGMPRLVSSPSLLAQLTXSPEAPGSPPP 437
P +P LVSSP+ +T P P PPP
Sbjct: 199 PQVPPLVSSPAPGTPVTPQPPPPPPPPP 226
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 520 PGMPRLVSSPSLLAQLTXSPEAPGSPPPV 434
P PR S PS+ + T +P SPPPV
Sbjct: 82 PPSPRRASPPSVSVEPTPAPVIAPSPPPV 110
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 252 SQQPTKTPSQPSGHY*RRLRPDFWK 178
S PT TPSQPS Y RR R + W+
Sbjct: 63 SPPPTPTPSQPSSSYHRR-RRESWE 86
>11_07_0002 - 27171791-27172222
Length = 143
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 435 TGGGDPGASGEXVSCAKSEGE---LTSLGIPGPPAVSSGHRAG 554
T GG PG SG S A + T G+ G PA + G G
Sbjct: 44 TSGGSPGGSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGG 86
>09_02_0279 + 6702517-6702948
Length = 143
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 435 TGGGDPGASGEXVSCAKSEGE---LTSLGIPGPPAVSSGHRAG 554
T GG PG SG S A + T G+ G PA + G G
Sbjct: 44 TSGGSPGGSGTRSSAASTSSARAGSTPAGVRGSPAGAGGSPGG 86
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = -2
Query: 551 RSVTAAHCWRSRDAQARQFTLAFGTANXFSGGTRVTTSSVHMHGSYNMNNLHNDVAVINH 372
+ + A H RD L G F G + S+ + Y N LH +A + H
Sbjct: 458 KGIIAHHLRTDRDVSQLFTKLTKGVVFDFYGNYYLMPLSLALEAHYQ-NRLHRWIAWLKH 516
Query: 371 NHV 363
NH+
Sbjct: 517 NHL 519
>06_01_0376 + 2709254-2711267,2711311-2711450
Length = 717
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 529 AGGPGMPRLVSSPSLLAQLTXSPEAPGSPPPVSI 428
AGG G R V L A L SP +P P P+ +
Sbjct: 9 AGGGGSHRSVHHAHLAALLNPSPRSPPHPHPLQL 42
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/39 (28%), Positives = 14/39 (35%)
Frame = +2
Query: 230 GVFVGCWLPXQHRKFCRSRQPRPKYQQSCCFHWLG*CAE 346
G + G + RK+ P CC HW C E
Sbjct: 149 GTYTGIFRQELQRKYHLKNSPCDPCMVHCCLHWCANCQE 187
>07_03_1616 - 28167872-28168303
Length = 143
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 556 TPAL*PLLTAGGPGMPRLVSSPSLLAQLTXSPEAPGSPPP 437
+PA +L+A PG L S +LL +L P +P SP P
Sbjct: 14 SPAASGILSAPRPGCAALAGSGALLPRLDGVPSSP-SPSP 52
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 511 PRLVSSPSLLAQLTXSPEAPGSPPP 437
PRLVSSP+ L P+ P P P
Sbjct: 49 PRLVSSPAKLTDDATPPQPPPQPQP 73
>02_02_0549 + 11410129-11412180
Length = 683
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 491 LAFGTANXFSGGTRVTTSSVHMHGSYNMNNLHN-DVAVINHNHVGFNNNIQRINLASGSN 315
LA F+G V ++S H+ + ++ + N D IN+NHVG N N +LAS N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLF-AVELDTIQNPDFRDINNNHVGININ----DLASRDN 183
Query: 314 N 312
+
Sbjct: 184 D 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,959
Number of Sequences: 37544
Number of extensions: 286383
Number of successful extensions: 1120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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