Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k04r
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    39   0.003
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    36   0.031
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    33   0.22 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical ...    31   0.67 
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    29   2.7  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    28   4.7  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    28   4.7  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    28   4.7  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    28   4.7  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    28   4.7  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    28   6.2  
L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    27   8.2  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    27   8.2  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = -2

Query: 623 LAGLVIALTNGRTSICGASLLXNTRSVTAAHCWRSRDAQARQFTLAFGTANXFSGGTRVT 444
           +A LV    NG+  +CGA+++ +   VTAAHC  +   Q R F       N  +     +
Sbjct: 51  MAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVYVREPKN--NRERSFS 106

Query: 443 TSSVHMHGSYNMNNLHNDVAVI 378
               ++H  YN     ND+A++
Sbjct: 107 VKEAYIHSGYNNQTADNDIALL 128


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
 Frame = -2

Query: 605 ALTNGRTSI--CGASLLXNTRSVTAAHCWRSRDAQARQFTLAFG--TANXFSGGTRV-TT 441
           AL N  T    CGAS+L  T  +TAAHC+   D +   + +  G    N   G  ++   
Sbjct: 43  ALRNKATKAHHCGASILDKTHLITAAHCF-EEDERVSSYEVVVGDWDNNQTDGNEQIFYL 101

Query: 440 SSVHMHGSYNMNNLHNDVAVINHNHVG--FNNNIQRINLAS 324
             +H +  Y  +   +D+A++   + G  FN   Q I L S
Sbjct: 102 QRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPS 141


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 578 CGASLLXNTRSVTAAHCWRSRDAQARQFTLAFGTANXFSGGT-RVTTSSVH 429
           CG SL+     +TAAHC+ ++D +   +++  G     SG   RVT  S+H
Sbjct: 84  CGGSLIDPNFVLTAAHCF-AKDRRPTSYSVRVGGHRSGSGSPHRVTAVSIH 133


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 623 LAGLVIALTNGRTSICGASLLXNTRSVTAAHCWRSRD 513
           LA ++    +G T++CG  L+  +  +T+AHC  S D
Sbjct: 31  LASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGD 67


>AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical
           protein Y81G3A.5 protein.
          Length = 323

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 444 GDPGASGEXVSCAKSE-GELTSLGIPGPPAVSSGHRAG 554
           G PG  G  V C     G + S+G+PGPP    G+  G
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGNSNG 236


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 553 PAL*PLLTAGGPGMPRLVSS-PSLLAQLTXS-PEAPGSPPPVSI 428
           P   P  +AG P +P+ V   PS  A  + S PEAP  PPP  I
Sbjct: 345 PQASPAKSAGAPQLPQKVPLFPSGGAPSSPSAPEAPSEPPPPKI 388


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 398 HNDVAVINHNHVGFNNNIQRINLASGSNN 312
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 398 HNDVAVINHNHVGFNNNIQRINLASGSNN 312
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 398 HNDVAVINHNHVGFNNNIQRINLASGSNN 312
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 328 PVEATTLLVLGPGLPASAELPMLXREPTTNK 236
           PVE TT   L P LP S +LPM   + TT K
Sbjct: 173 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 202


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -3

Query: 328 PVEATTLLVLGPGLPASAELPMLXREPTTNK 236
           PVE TT   L P LP S +LPM   + TT K
Sbjct: 248 PVETTTTTTLKPTLP-SLKLPMSLDDLTTTK 277


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 532 TAGGPGMPRLVSSPSLLAQLTXSPEAPGSP 443
           +AG PG PRL   PS +AQ      AP SP
Sbjct: 757 SAGAPGSPRLPPKPS-VAQTIAMHSAPPSP 785


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -3

Query: 532 TAGGPGMPRLVSSPSLLAQLTXSPEAPGSP 443
           +AG PG PRL   PS +AQ      AP SP
Sbjct: 656 SAGAPGSPRLPPKPS-VAQTIAMHSAPPSP 684


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 526  GGPGMPRLVSSPSLLAQLTXSPEAPGSPPPVSI 428
            GGPG PRL+  P    QL      P  PPPV +
Sbjct: 1424 GGPGGPRLI-MPGQFPQL-QGRRIPQQPPPVQL 1454


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 526  GGPGMPRLVSSPSLLAQLTXSPEAPGSPPPVSI 428
            GGPG PRL+  P    QL      P  PPPV +
Sbjct: 1424 GGPGGPRLI-MPGQFPQL-QGRRIPQQPPPVQL 1454


>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 444 GDPGASGEXVSCAKSEGELTSLGIPGPP 527
           G+PGA G+      + G   + G PGPP
Sbjct: 219 GNPGAPGQVTETPGTPGPAGAAGPPGPP 246


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 444 GDPGASGEXVSCAKSEGELTSLGIPGPP 527
           G+PGA G+      + G   + G PGPP
Sbjct: 229 GNPGAPGQVTETPGTPGPAGAAGPPGPP 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,525
Number of Sequences: 27780
Number of extensions: 218364
Number of successful extensions: 871
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)