Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11k04r
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont...    29   3.3  
At1g04310.1 68414.m00422 ethylene receptor-related similar to et...    29   3.3  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   4.4  
At5g23410.1 68418.m02745 expressed protein similar to Adagio 3 [...    28   5.8  

>At4g13560.1 68417.m02113 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein similar to LEA protein [Cicer arietinum]
           GI:2909420; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 109

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 482 QKRG*TDEPGHPWTSSSEQRSQSGCXSVRKL 574
           Q RG   E    WT S++Q +QS C     L
Sbjct: 10  QNRGQAQEKAEQWTESAKQTAQSACDKTADL 40


>At1g04310.1 68414.m00422 ethylene receptor-related similar to
           ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
           contains Pfam profiles PF01590: GAF domain, PF00512: His
           Kinase A (phosphoacceptor) domain
          Length = 645

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 361 PTWLWLMTATSLWRLFML*LPCIWTLEVVTLVP 459
           P W W+MTA +++++    +  +  L +VTL+P
Sbjct: 110 PHWPWVMTAVTVFKMLTGIVSFLTALSLVTLLP 142


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 527 WRSRDAQARQFTLAFGTANXFSGGTRVTTSSVHMHGSYNMNNLH 396
           WR  +   +   LA+G +    GGTRV     H    + +N LH
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g23410.1 68418.m02745 expressed protein similar to Adagio 3
           [Arabidopsis thaliana] GI:13487072/FKF1 [Arabidopsis
           thaliana] GI:6960305
          Length = 84

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 527 WRSRDAQARQFTLAFGTANXFSGGTRVTTSSVHMHGSYNMNNLH 396
           WR  +   +   LA+G +    GGTRV     H    + +N LH
Sbjct: 29  WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHNGEEWILNELH 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,441
Number of Sequences: 28952
Number of extensions: 198489
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)