Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11k03r
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.15
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.35
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.35
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 31 1.1
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 30 1.4
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar... 29 3.3
At3g49200.1 68416.m05377 hypothetical protein 28 7.6
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 7.6
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 7.6
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 7.6
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -1
Query: 672 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 492 NLEGKVARITG 460
+ GK+ + G
Sbjct: 454 TISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -1
Query: 672 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 492 NLEGKVAR 469
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = -1
Query: 672 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
+V V ++ + + +A + S IA +LKN KL +N + + L +A +
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453
Query: 492 NLEGKVAR 469
+ GK+ +
Sbjct: 454 TISGKIGK 461
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Frame = -1
Query: 432 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHN--- 262
N + L N Q +EV+ + G L + H RL++ T+ LC N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476
Query: 261 -RAYEVFAATITHGKHYGNQCSTE 193
R V + G H +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +2
Query: 311 LTKKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSK 490
L S+ PI+ KP + P+ S+ I+ S+ SRS + SR+ + P ++ ++
Sbjct: 4 LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59
Query: 491 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 634
FL V +L + S N R VA++ V ++++ V
Sbjct: 60 FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107
>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
tuberosum}
Length = 623
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = -1
Query: 507 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 349
G+ +N G R G+ SA D + + A+ V+ ++ TDGS + +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207
Query: 348 LGVAIGHIDFFVNGRLVQP 292
+G+A+G +D +V + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -1
Query: 489 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 337
LE V+ +T LD S WE ++L L T+DA+ V V+ H+ G G++ L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 297 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 187
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 297 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 187
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 297 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 187
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,223
Number of Sequences: 28952
Number of extensions: 335320
Number of successful extensions: 867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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